Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

18517561 .. 18522030

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG203300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGCACCGGCGAGCTTCTCAGCATCGAGCCTCTCGAGCTCAAGTTCCCCTTCGAATTGAAGAAGCAGATCTCTTGCTCGCTTCAGCTCTCGAATAAGACCGATAGCTATGTCGCTTTCAAGGTCAAAACTACGAATCCAAAGAAGTATTGTGTTCGTCCGAACACGGGAATTGTTTTGCCGCGATCCACGTGTGATGTTATAGTTACAATGCAGGCGCAAAAAGAGGCTCCTCCAGACATGCAATGCAAGGATAAGTTTCTCCTGCAGAGTGTAAAAACCAATGACGGTGCAACTCCGAAGGATATTACTCCAGAAGTGTTCAATAAAGACGCAGGACATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTTTCTCCACCTCAGCCCCCTTCTCCGGTCCCAGAAGGGTCAGAGGAAGGGTCTTCACCAAGAGCTTCTGTTACAGAGAATGGAAATCTTAATGGTTCCGAGTTTTCCAATGCTGCAAAAGGACTTTCAGAGCAGATTGAAGTTCCGAAGAGATCTGCAGAGGTAAATGCCTACACATGCAGAAACAAAAGCCCTAGTTTATTTGTTTACTATTGTGTCACATATAACTCATCCAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

205

Amino Acids

22.54

Weight (kDa)

7.49

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	2.4e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	167, 400
AflIII	ACRYGT	2 cut(s)	191, 340
AgsI	TTSAA	4 cut(s)	61, 121, 325, 515
AluBI	AGCT	5 cut(s)	16, 40, 88, 108, 440
AluI	AGCT	5 cut(s)	16, 40, 88, 108, 440
Alw21I	GWGCWC	2 cut(s)	8, 42
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	475
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	2 cut(s)	266, 531
BglII	AGATCT	2 cut(s)	69, 527
BisI	GCNGC	2 cut(s)	182, 489
BlsI	GCNGC	2 cut(s)	183, 490
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	3 cut(s)	231, 405, 472
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	2 cut(s)	219, 297
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 400
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	605
BseLI	CCNNNNNNNGG	2 cut(s)	167, 400
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	34, 401
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	2 cut(s)	222, 365
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	9, 401
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	167, 400
BsmFI	GGGAC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp143I	GATC	3 cut(s)	69, 185, 527
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	2 cut(s)	33, 400
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	231, 405, 472
BspMAI	CTGCAG	2 cut(s)	270, 535
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	609
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	3 cut(s)	69, 185, 527
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	14, 80, 216
BstDEI	CTNAG	2 cut(s)	20, 387
BstF5I	GGATG	1 cut(s)	605
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	72, 188, 530
BstMBI	GATC	3 cut(s)	69, 185, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	3 cut(s)	244, 344, 555
BstSFI	CTRYAG	2 cut(s)	266, 531
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 527
BstYI	RGATCY	2 cut(s)	69, 527
BtsCI	GGATG	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	14, 80, 216
CaiI	CAGNNNCTG	1 cut(s)	615
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	1 cut(s)	341
CviAII	CATG	3 cut(s)	241, 341, 552
CviJI	RGCY	9 cut(s)	16, 31, 40, 88, 108, 230, 391, 440, 567
CviKI_1	RGCY	9 cut(s)	16, 31, 40, 88, 108, 230, 391, 440, 567
DdeI	CTNAG	2 cut(s)	20, 387
DpnI	GATC	3 cut(s)	71, 187, 529
DpnII	GATC	3 cut(s)	69, 185, 527
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	3 cut(s)	244, 344, 555
FaiI	YATR	9 cut(s)	111, 203, 242, 342, 373, 375, 553, 598, 600
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	240, 340, 551
Fnu4HI	GCNGC	2 cut(s)	182, 489
FokI	GGATG	1 cut(s)	592
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	182, 489
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	182, 489
GsuI	CTGGAG	2 cut(s)	219, 297
HapII	CCGG	2 cut(s)	9, 401
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	244, 344, 555
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	9, 401
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	7 cut(s)	162, 300, 418, 475, 505, 522, 617
Hpy188III	TCNNGA	4 cut(s)	35, 91, 236, 314
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	5 cut(s)	61, 295, 404, 405, 416
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	9 cut(s)	214, 244, 249, 268, 293, 357, 491, 533, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	20, 387
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	3 cut(s)	244, 344, 555
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	69, 185, 527
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	22, 200, 249, 278, 321, 327, 414, 420
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	205, 445, 592
MalI	GATC	3 cut(s)	71, 187, 529
MboI	GATC	3 cut(s)	69, 185, 527
MboII	GAAGA	3 cut(s)	73, 420, 535
MflI	RGATCY	2 cut(s)	69, 527
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	3 cut(s)	56, 171, 359
MnlI	CCTC	7 cut(s)	42, 220, 243, 343, 396, 412, 529
MseI	TTAA	1 cut(s)	465
MspI	CCGG	2 cut(s)	9, 401
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	69, 185, 527
NlaIII	CATG	3 cut(s)	244, 344, 555
NlaIV	GGNNCC	3 cut(s)	231, 405, 472
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	3 cut(s)	244, 344, 555
NspV	TTCGAA	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	35
PciI	ACATGT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	183, 490
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	192
PscI	ACATGT	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	42
PspCI	CACGTG	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	231, 405, 472
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	2 cut(s)	270, 535
PstNI	CAGNNNCTG	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	69, 527
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	182, 489
Sau3AI	GATC	3 cut(s)	69, 185, 527
Sau96I	GGNCC	1 cut(s)	403
SduI	GDGCHC	2 cut(s)	8, 42
SetI	ASST	9 cut(s)	18, 42, 90, 110, 126, 194, 388, 442, 540
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	2 cut(s)	266, 531
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	403
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	35, 41
SmoI	CTYRAG	2 cut(s)	35, 41
Sse9I	AATT	3 cut(s)	56, 171, 359
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	27, 36, 54, 92
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	56, 171, 359
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	3 cut(s)	244, 344, 555
XhoI	CTCGAG	1 cut(s)	35
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.