Rorug01G0202600

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001420
Physical Location & Seq
Forward (+)
28191457 .. 28192488
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0202600.1

Sequence Viewer

Length: 1032 bp
ATGGCAATTGTATCGGTAAAGCTTTGCAGAACTCTTCTTCCTTTACATTGTTGTCTCCTCAAGTATCGCTCTATTAACTCAATATCTGCATCGCATTCACTCCAAGAAACTGTAAGAAATGCAGTTGAAGCCAAAGCCTATGAGAAGATTCCTGATCTTCTCGTTTCCTTTGGACAAGCTTGCCAAAACCCGAATCCTTTTGCGTTCCTATCAACCTTTCCCGACAGCCTTAGAATGCAAGTTGTTGATGAAATCTTACAGTCTTTCATCCCCATAAGGCCCCGCTTTCGTGCTCAGGCTGCCTATGCCTACCTCCTGTCTTTTACTCTACAAACCTCCAATCCTCTCCCTCTTGGTCTTGCCATTCTCCAGCGAACTCTTCGCTCTGGTTGCGTCCCTGTTGCCCAAACCCGTCTTCTCCTCTCGTCCGCTTGGGTGAACTGCAGGAAGGAATCTCGGTCTGTCTCTGACACCCTATTTGAGATGCAGTCAGTTGGATATCACCCTGACAGTAGTACGTGTAACTACCTTATATGGTCTTTGTGTGATGTTGATCAATTGGATGAGGCTGTTAAAGTCTTGAAGGGCATGAGTAGGGCTGGATGTGTTCCTGATTTGGAGAGTTTTGACACAGTAGTTCGTGCGATGTGCAGGGTCAGAAAAACTTCTGAGGCATTAGATATGATAAAGAAAATGGTGGAGAAAGTTGGGTTGACACCGAGGCAGGGGACTATTGTGAAAGTAGCGGCAGCATTGCGAGCAAACAGAGAGATATGGAGAGCAGTTGAGCTGATTGAGTTCTTAGAGAGGAAGGATTACCCTGTTGGGTTTGACAGCTATGATTTAGTGGTTAAAGGCTGCTTGGATTCTGGTGAGAATATATTGGCTGGGAAGGTGGTCATGAGGATGACAGAGAATGGCTTCATACCGTATATCAGGACCAGGCACAAGGTTGTGGACAGGTTGGCTGGTGCTGGTGAGTGGAAGTTAGCGTATGCTGTGAGACAAAGATTTGCTGAATTGAGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

343

Amino Acids

38.53

Weight (kDa)

9.16

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 169 - 218 1.1e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 283, 429, 746
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 1 cut(s) 725
AflIII ACRYGT 1 cut(s) 518
AgsI TTSAA 2 cut(s) 128, 583
AjnI CCWGG 1 cut(s) 941
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AloI GAACNNNNNNTCC 2 cut(s) 22, 54
AluBI AGCT 4 cut(s) 22, 179, 790, 837
AluI AGCT 4 cut(s) 22, 179, 790, 837
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 59, 469, 997
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 3 cut(s) 299, 749, 858
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
Asp700I GAANNNNTTC 2 cut(s) 664, 920
AspS9I GGNCC 2 cut(s) 279, 939
AsuHPI GGTGA 4 cut(s) 448, 494, 884, 989
AvaII GGWCC 1 cut(s) 939
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 286, 761, 845
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 943
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 3 cut(s) 59, 469, 997
BfmI CTRYAG 1 cut(s) 442
BisI GCNGC 4 cut(s) 300, 747, 750, 859
BlsI GCNGC 4 cut(s) 301, 748, 751, 860
Bme1390I CCNGG 1 cut(s) 943
Bme18I GGWCC 1 cut(s) 939
BmgT120I GGNCC 2 cut(s) 279, 939
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 943
BmsI GCATC 2 cut(s) 98, 474
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 519
BsaBI GATNNNNATC 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 719
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse3DI GCAATG 1 cut(s) 752
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 943
BseDI CCNNGG 1 cut(s) 719
BseGI GGATG 4 cut(s) 267, 568, 608, 912
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 2 cut(s) 308, 660
BseRI GAGGAG 2 cut(s) 47, 410
BseXI GCAGC 3 cut(s) 286, 761, 845
BseYI CCCAGC 1 cut(s) 887
BsgI GTGCAG 1 cut(s) 670
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 295
BslFI GGGAC 2 cut(s) 380, 742
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 3 cut(s) 59, 469, 997
BsmFI GGGAC 2 cut(s) 380, 742
BsmI GAATGC 2 cut(s) 94, 240
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 2 cut(s) 154, 553
BspACI CCGC 3 cut(s) 283, 429, 746
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 307, 661
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 1 cut(s) 281
BspMAI CTGCAG 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 752
BssECI CCNNGG 1 cut(s) 719
BssMI GATC 2 cut(s) 154, 553
Bst2UI CCWGG 1 cut(s) 943
Bst4CI ACNGT 5 cut(s) 112, 261, 512, 634, 930
Bst6I CTCTTC 2 cut(s) 39, 384
BstBAI YACGTR 1 cut(s) 519
BstC8I GCNNGC 2 cut(s) 181, 759
BstDEI CTNAG 5 cut(s) 230, 294, 669, 802, 1029
BstF5I GGATG 4 cut(s) 267, 568, 608, 912
BstKTI GATC 2 cut(s) 157, 556
BstMAI GTCTC 3 cut(s) 59, 469, 997
BstMBI GATC 2 cut(s) 154, 553
BstMWI GCNNNNNNNGC 5 cut(s) 128, 299, 305, 390, 758
BstNI CCWGG 1 cut(s) 943
BstSCI CCNGG 1 cut(s) 941
BstSFI CTRYAG 1 cut(s) 442
BstV1I GCAGC 3 cut(s) 286, 761, 845
BstV2I GAAGAC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 280
BtgZI GCGATG 2 cut(s) 75, 659
BtsCI GGATG 4 cut(s) 267, 568, 608, 912
Cac8I GCNNGC 2 cut(s) 181, 759
CciI TCATGA 1 cut(s) 900
Cfr13I GGNCC 2 cut(s) 279, 939
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 516
CviAII CATG 2 cut(s) 589, 901
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 5 cut(s) 230, 294, 669, 802, 1029
DpnI GATC 2 cut(s) 156, 555
DpnII GATC 2 cut(s) 154, 553
Eam1104I CTCTTC 2 cut(s) 39, 384
EarI CTCTTC 2 cut(s) 39, 384
Eco32I GATATC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 939
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 941
EcoRV GATATC 1 cut(s) 500
FaeI CATG 2 cut(s) 592, 904
FaqI GGGAC 2 cut(s) 380, 742
FatI CATG 2 cut(s) 588, 900
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 4 cut(s) 300, 747, 750, 859
FokI GGATG 4 cut(s) 254, 575, 615, 919
Fsp4HI GCNGC 4 cut(s) 300, 747, 750, 859
GluI GCNGC 4 cut(s) 300, 747, 750, 859
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 1 cut(s) 280
HgaI GACGC 1 cut(s) 382
Hin1II CATG 2 cut(s) 592, 904
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HindIII AAGCTT 2 cut(s) 20, 177
HinfI GANTC 4 cut(s) 148, 193, 452, 866
HphI GGTGA 4 cut(s) 448, 494, 884, 989
Hpy166II GTNNAC 3 cut(s) 439, 714, 958
Hpy188I TCNGA 3 cut(s) 469, 659, 670
Hpy188III TCNNGA 6 cut(s) 152, 221, 580, 611, 901, 937
Hpy8I GTNNAC 3 cut(s) 439, 714, 958
HpyAV CCTTC 4 cut(s) 442, 577, 805, 886
HpyCH4III ACNGT 5 cut(s) 112, 261, 512, 634, 930
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 7 cut(s) 27, 89, 122, 238, 444, 487, 651
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 299, 305, 390, 758
HpyF3I CTNAG 5 cut(s) 230, 294, 669, 802, 1029
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 2 cut(s) 592, 904
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 2 cut(s) 154, 553
Lsp1109I GCAGC 3 cut(s) 286, 761, 845
LweI GCATC 2 cut(s) 98, 474
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 1 cut(s) 521
MalI GATC 2 cut(s) 156, 555
MboI GATC 2 cut(s) 154, 553
MboII GAAGA 6 cut(s) 26, 29, 149, 157, 371, 407
MfeI CAATTG 2 cut(s) 6, 557
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 3 cut(s) 6, 557, 1019
MmeI TCCRAC 1 cut(s) 475
MroXI GAANNNNTTC 2 cut(s) 664, 920
MseI TTAA 3 cut(s) 75, 573, 852
MslI CAYNNNNRTG 1 cut(s) 905
MspR9I CCNGG 1 cut(s) 943
MunI CAATTG 2 cut(s) 6, 557
Mva1269I GAATGC 2 cut(s) 94, 240
MvaI CCWGG 1 cut(s) 943
MwoI GCNNNNNNNGC 5 cut(s) 128, 299, 305, 390, 758
NdeII GATC 2 cut(s) 154, 553
NlaIII CATG 2 cut(s) 592, 904
NlaIV GGNNCC 1 cut(s) 281
PagI TCATGA 1 cut(s) 900
PctI GAATGC 2 cut(s) 94, 240
PdmI GAANNNNTTC 2 cut(s) 664, 920
PfeI GAWTC 4 cut(s) 148, 193, 452, 866
PkrI GCNGC 4 cut(s) 301, 748, 751, 860
Ppu21I YACGTR 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 941
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 1 cut(s) 941
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 2 cut(s) 279, 939
PstI CTGCAG 1 cut(s) 446
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 3 cut(s) 75, 573, 852
SatI GCNGC 4 cut(s) 300, 747, 750, 859
Sau3AI GATC 2 cut(s) 154, 553
Sau96I GGNCC 2 cut(s) 279, 939
ScrFI CCNGG 1 cut(s) 943
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 2 cut(s) 98, 474
SfcI CTRYAG 1 cut(s) 442
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 6, 557, 1019
SsiI CCGC 3 cut(s) 283, 429, 746
StyD4I CCNGG 1 cut(s) 941
TaaI ACNGT 5 cut(s) 112, 261, 512, 634, 930
TaiI ACGT 1 cut(s) 521
TaqII GACCGA 1 cut(s) 447
TasI AATT 3 cut(s) 6, 557, 1019
TauI GCSGC 1 cut(s) 749
TfiI GAWTC 4 cut(s) 148, 193, 452, 866
Tru1I TTAA 3 cut(s) 75, 573, 852
Tru9I TTAA 3 cut(s) 75, 573, 852
TseI GCWGC 3 cut(s) 299, 749, 858
TspDTI ATGAA 3 cut(s) 256, 264, 913
VpaK11BI GGWCC 1 cut(s) 939
XmnI GAANNNNTTC 2 cut(s) 664, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.