Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

49960864 .. 49964574

Gene Structure 3711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGCACCGGCGAGCTTCTCAGCATCGAGCCTCTCGAGCTCAAGTTCCCCTTCGAATTGAAGAAGCAGATCTCTTGCTCGCTTCAGCTCTCGAATAAGACCGATAGCTATGTAGCTTTCAAGGTCAAAACTACGAATCCAAAGAAGTATTGTGTTCGTCCGAACACGGGAATTGTTTTGCCGCGATCCACGTGTGATGTTATAGTTACAATGCAGGCGCAAAAAGAGGCTCCTCCAGACATGCAATGCAAGGATAAGTTTCTCCTGCAGAGTGTAAAAACCAATGACGGTGCAACTCCGAAGGATATTACTCCAGAAGTGTTCAATAAAGACGCAGGACATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTTTCTCCACCTCAGCCCCCTTCTCCGGTCCCAGAAGGGTCAGAGGAAGGGTCTTCACCAAGAGCTTCTGTTACAGAGAATGGAAATCTTAATGGTTCCGAGTTTTCCAATAGAAATGACCTTGAATGCAGTTGTTTCTCCTGGTTCTGTGACCAATTAGAGTTTACACTTATTAAGAAATTGTCAGAGGAAAAGTCAAATGCGCTTCAAACAAATAAGAGGCTTCGTCAGGAGCTGGAACTCTTAAGAAATCAAGGGGGCAAAAGCCATGGTGGTGTTTCAATCATTGTCGTCATTATTATTGGCCTCATTGGCTTACTTTTGGGTTATCTCATGAAGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

241

Amino Acids

26.57

Weight (kDa)

8.05

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	3.5e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	167, 400
AflII	CTTAAG	1 cut(s)	619
AflIII	ACRYGT	2 cut(s)	191, 340
AgsI	TTSAA	6 cut(s)	61, 121, 325, 500, 584, 657
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	7 cut(s)	16, 40, 88, 108, 116, 440, 610
AluI	AGCT	7 cut(s)	16, 40, 88, 108, 116, 440, 610
Alw21I	GWGCWC	2 cut(s)	8, 42
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	679
AspLEI	GCGC	2 cut(s)	220, 580
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvCI	CCTCAGC	1 cut(s)	387
BciT130I	CCWGG	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	619
BglI	GCCNNNNNGGC	1 cut(s)	687
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	3 cut(s)	231, 405, 472
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	2 cut(s)	219, 297
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 400
Bse118I	RCCGGY	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	1 cut(s)	643
BseLI	CCNNNNNNNGG	2 cut(s)	167, 400
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	34, 401
BseRI	GAGGAG	2 cut(s)	222, 365
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	681
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	9, 401
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	167, 400
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	681
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp143I	GATC	2 cut(s)	69, 185
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	2 cut(s)	33, 400
BspFNI	CGCG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	3 cut(s)	231, 405, 472
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	2 cut(s)	69, 185
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	619
BstBAI	YACGTR	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	14, 80, 216
BstDEI	CTNAG	2 cut(s)	20, 387
BstDSI	CCRYGG	1 cut(s)	643
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	220, 580
BstKTI	GATC	2 cut(s)	72, 188
BstMBI	GATC	2 cut(s)	69, 185
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 687
BstNI	CCWGG	1 cut(s)	517
BstNSI	RCATGY	2 cut(s)	244, 344
BstSCI	CCNGG	1 cut(s)	515
BstSFI	CTRYAG	1 cut(s)	266
BstUI	CGCG	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	643
Cac8I	GCNNGC	3 cut(s)	14, 80, 216
CaiI	CAGNNNCTG	1 cut(s)	610
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	2 cut(s)	220, 580
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	1 cut(s)	341
CviAII	CATG	4 cut(s)	241, 341, 644, 709
DdeI	CTNAG	2 cut(s)	20, 387
DpnI	GATC	2 cut(s)	71, 187
DpnII	GATC	2 cut(s)	69, 185
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	643
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	4 cut(s)	244, 344, 647, 712
FaiI	YATR	8 cut(s)	111, 203, 242, 342, 373, 375, 645, 710
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	4 cut(s)	240, 340, 643, 708
Fnu4HI	GCNGC	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	182
GlaI	GCGC	2 cut(s)	219, 579
GluI	GCNGC	1 cut(s)	182
GsuI	CTGGAG	2 cut(s)	219, 297
HaeIII	GGCC	1 cut(s)	681
HapII	CCGG	2 cut(s)	9, 401
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	2 cut(s)	220, 580
Hin1II	CATG	4 cut(s)	244, 344, 647, 712
Hin6I	GCGC	2 cut(s)	218, 578
HinP1I	GCGC	2 cut(s)	218, 578
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	9, 401
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	5 cut(s)	162, 300, 418, 475, 562
Hpy188III	TCNNGA	6 cut(s)	35, 91, 236, 314, 605, 709
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	5 cut(s)	61, 295, 404, 405, 416
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	7 cut(s)	214, 244, 249, 268, 293, 357, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 687
HpyF3I	CTNAG	2 cut(s)	20, 387
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	4 cut(s)	244, 344, 647, 712
HspAI	GCGC	2 cut(s)	218, 578
Kzo9I	GATC	2 cut(s)	69, 185
LmnI	GCTCC	2 cut(s)	235, 607
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	205, 445, 524
MalI	GATC	2 cut(s)	71, 187
MboI	GATC	2 cut(s)	69, 185
MboII	GAAGA	2 cut(s)	73, 420
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	5 cut(s)	56, 171, 359, 530, 554
MnlI	CCTC	9 cut(s)	42, 220, 243, 343, 396, 412, 556, 588, 692
MseI	TTAA	3 cut(s)	465, 549, 620
MslI	CAYNNNNRTG	1 cut(s)	648
MspCI	CTTAAG	1 cut(s)	619
MspI	CCGG	2 cut(s)	9, 401
MspR9I	CCNGG	1 cut(s)	517
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	517
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	37, 687
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	2 cut(s)	69, 185
NlaIII	CATG	4 cut(s)	244, 344, 647, 712
NlaIV	GGNNCC	3 cut(s)	231, 405, 472
NmuCI	GTSAC	1 cut(s)	524
NspI	RCATGY	2 cut(s)	244, 344
NspV	TTCGAA	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	35
PagI	TCATGA	1 cut(s)	708
PciI	ACATGT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	183
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	192
PscI	ACATGT	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	515
PspCI	CACGTG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	3 cut(s)	231, 405, 472
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	465, 549, 620
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	69, 185
Sau96I	GGNCC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	2 cut(s)	8, 42
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	403
SlaI	CTCGAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	3 cut(s)	35, 41, 619
SmoI	CTYRAG	3 cut(s)	35, 41, 619
Sse9I	AATT	5 cut(s)	56, 171, 359, 530, 554
SsiI	CCGC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	515
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	27, 36, 54, 92
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	56, 171, 359, 530, 554
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	465, 549, 620
Tru9I	TTAA	3 cut(s)	465, 549, 620
TseFI	GTSAC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	524
Vha464I	CTTAAG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	2 cut(s)	244, 344
XhoI	CTCGAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.