Rmu_sc0008864.1_g000005

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008864.1
Physical Location & Seq
Reverse (-)
34221 .. 34617
397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008864.1_g000005.1.cds

Sequence Viewer

Length: 309 bp
atgcaatgcaaggacaagtttctccttcagagtgtaaaaacgaatgatggtgcaactccaaaggagattactctagaagtgttcaatgaagaggcaggacatgtggttgaggagtgcaaattcagagtggtgtatgtttctccacctcagcccccttctccggtctcagaaaggtcggaggaagggtcttcaccaagagcttcaatagtggagaatgaaaatcttaatgctgctgagtttgccaatgtgagtactttaattataaggctatataatgaatattttccatattcagaagaaagatattga

Protein Analysis

102

Amino Acids

11.59

Weight (kDa)

4.68

Isoelectric Point (pI)

66.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 2 cut(s) 85, 204
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 3 cut(s) 161, 180, 225
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 169
BspCNI CTCAG 3 cut(s) 160, 179, 226
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 147, 166, 234
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 101
CviJI RGCY 3 cut(s) 151, 200, 268
CviKI_1 RGCY 3 cut(s) 151, 200, 268
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 147, 166, 234
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 11
FaeI CATG 1 cut(s) 104
FaiI YATR 6 cut(s) 102, 135, 263, 271, 273, 289
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 231
HapII CCGG 1 cut(s) 161
Hin1II CATG 1 cut(s) 104
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 183
Hpy188I TCNGA 5 cut(s) 30, 125, 169, 178, 295
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 35, 165, 176
HpyCH4V TGCA 4 cut(s) 4, 9, 53, 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 147, 166, 234
Hsp92II CATG 1 cut(s) 104
LpnPI CCDG 2 cut(s) 81, 174
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 74
MboII GAAGA 3 cut(s) 101, 180, 308
MluCI AATT 2 cut(s) 119, 258
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 85, 103, 156, 172
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 2 cut(s) 225, 257
MspI CCGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 1 cut(s) 104
NspI RCATGY 1 cut(s) 104
PciI ACATGT 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 232
PscI ACATGT 1 cut(s) 100
PsiI TTATAA 1 cut(s) 263
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 225, 257
SatI GCNGC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 253
SetI ASST 3 cut(s) 148, 176, 202
SgeI CNNG 7 cut(s) 22, 28, 86, 108, 113, 173, 207
Sse9I AATT 2 cut(s) 119, 258
SspI AATATT 1 cut(s) 281
SspMI CTAG 1 cut(s) 74
TasI AATT 2 cut(s) 119, 258
TatI WGTACW 1 cut(s) 251
Tru1I TTAA 2 cut(s) 225, 257
Tru9I TTAA 2 cut(s) 225, 257
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 102, 231, 291
XapI RAATTY 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.