RchiOBHm_Chr2g0099851

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
11915185 .. 11915691
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47456

Sequence Viewer

Length: 417 bp
ATGTTTGTTGTATATATATGTGAATTTGTTACCTTACAAAGATTAATGTTAAAAATTGTATGTTGTGATTTAGTTACAGTGCAAGCACAGAAAGAGACTGCTCCAGACATGCAATGCAAGGACAAGTTTCTCCTTCAGAGTGTAAAAACCAATGATGGTGCAACTCCAAAGGAGATTACTCTAGAAGTGTTCAATGAAGAGGCAGGACATGTGGTTGAGGAGTGCAAATTCAGAGTGGTGTATGTTTCTCCACCTCAGCCCCCTTCTCCGGTCTCAGAAAGGTCGGAGGAAGGGTCTTCACCAAGAGCTTCAATAGTGGAGAATGAAAATCTTAATGCTGCTGAGATTTCCAATGTGAGTTCTTTAATTGTAAGGCTATATAATGAATATTTTCCATATTCAGAAGAAAGATATTGA

Protein Analysis

138

Amino Acids

15.67

Weight (kDa)

4.69

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 23, 227
AcuI CTGAAG 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 2 cut(s) 193, 312
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 89, 277
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 23, 227
AseI ATTAAT 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 89, 277
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 3 cut(s) 269, 288, 333
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 89, 277
Bso31I GGTCTC 1 cut(s) 277
BspCNI CTCAG 3 cut(s) 268, 287, 334
BspTNI GGTCTC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 255, 274, 342
BstMAI GTCTC 2 cut(s) 89, 277
BstNSI RCATGY 2 cut(s) 112, 212
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 84
CviAII CATG 2 cut(s) 109, 209
CviJI RGCY 3 cut(s) 259, 308, 376
CviKI_1 RGCY 3 cut(s) 259, 308, 376
DdeI CTNAG 3 cut(s) 255, 274, 342
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 119
FaeI CATG 2 cut(s) 112, 212
FatI CATG 2 cut(s) 108, 208
Fnu4HI GCNGC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 1 cut(s) 269
Hin1II CATG 2 cut(s) 112, 212
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 291
Hpy188I TCNGA 5 cut(s) 138, 233, 277, 286, 403
Hpy188III TCNNGA 2 cut(s) 104, 182
HpyAV CCTTC 3 cut(s) 143, 273, 284
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 5 cut(s) 82, 112, 117, 161, 225
HpyF3I CTNAG 3 cut(s) 255, 274, 342
Hsp92II CATG 2 cut(s) 112, 212
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 3 cut(s) 117, 189, 282
Lsp1109I GCAGC 1 cut(s) 325
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 28, 73
MboII GAAGA 3 cut(s) 209, 288, 416
MluCI AATT 4 cut(s) 23, 54, 227, 366
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 193, 211, 264, 280
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 4 cut(s) 44, 50, 333, 365
MspI CCGG 1 cut(s) 269
NlaIII CATG 2 cut(s) 112, 212
NspI RCATGY 2 cut(s) 112, 212
PciI ACATGT 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 390
PkrI GCNGC 1 cut(s) 340
PscI ACATGT 1 cut(s) 208
PshBI ATTAAT 1 cut(s) 44
SaqAI TTAA 4 cut(s) 44, 50, 333, 365
SatI GCNGC 1 cut(s) 339
SetI ASST 4 cut(s) 35, 256, 284, 310
Sse9I AATT 4 cut(s) 23, 54, 227, 366
SspI AATATT 1 cut(s) 389
SspMI CTAG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 79
TasI AATT 4 cut(s) 23, 54, 227, 366
Tru1I TTAA 4 cut(s) 44, 50, 333, 365
Tru9I TTAA 4 cut(s) 44, 50, 333, 365
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 210, 339, 399
TspRI CASTG 1 cut(s) 84
VspI ATTAAT 1 cut(s) 44
XapI RAATTY 2 cut(s) 23, 227
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 2 cut(s) 112, 212
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.