Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

2016256 .. 2024458

Gene Structure 8203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0012500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTTCTCTAACCAATGAAGCAGCAGCCAGTTCTTCATCTTCTTCTCTTCCACGTTCTTCTACTGACCAAATTCATTACATATACGAGGTGTTCCTGAGTTTTCGAGGCGAGGATACGCGCTTTAGTTTTACAGATCATTTGCACACCGCTTTGGATGATAGGGGAATTAAGACCTTCATAAATGATGAGCTCAGAAGAGGAGAAGAAATATCATCGGCTCTTCTCAAAACAATTGAGGAGTCAAGAGTTTCAATCATCGTCTTCTCTCAAACTTATGCTGCCTCAAGGTGGTGCTTAGATGAACTGGTCAAGATACTTGAATGCAGAAAATCAAAAACACAACAGGTCATACCTGTTTTCTACAAAGTGGATCCCTCAGATGTACGACATCAAACAGGTGATTTCGGTGACGCATTTGCTACACTTGATCAATGCAAATACAAGGATAGCATGGACAAATGGAGGGCAGCTCTTAAGGAAGCAGCAGATTTGTCTAGATGGCCTTTCAAGGATGGCGAATCCGAGGCTAGATTTATCAAGGGAATTGTTGGGAAATTGTCCGCCCAAGTAATAAACCCTTCATGTGAGTTGCACGTTGCTGAACATCCAATTGGATTAGTGTCTTGTAGACAAGATGTCAACAGACTTTTACACGCTGAGGAAAATATTGTTCACATGGTAGGCATATGGGGGACTGGTGGAATAGGAAATACCACAATTGCGAATGATGTGTTTAATTCAATTCGCCATAAGTTTGAAGGTACCTGTTTCTTGGCAGATGTTAGATCAAATGCCCTAGTCCAATTGCAAGAGACACTTTTATTTGATATTTTAAGAGACTCAACTTTGAAGGTGAACAGTGTTGATAAAGGAGTTGGTTTGATAAAGACAAGGATGCGAAATAAAAAATTTGACTGCATTCAAACGAAATGGACCTCCAGGCGATTATCTGGGACTTGCACGGTGTGTTGTACGCTATGTCCAGGGCCTTCCATTAGCTTTGATAGTTTTAGGCTCTCATCTATATGGGAGAAGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

348

Amino Acids

39.18

Weight (kDa)

7.55

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	29 - 189	1.5e-54	TIR domain
TIR_2	PF13676	31 - 131	1.6e-16	TIR domain
NB-ARC	PF00931	215 - 303	4.6e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	764
AccB1I	GGYRCC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	1 cut(s)	121
AciI	CCGC	2 cut(s)	150, 564
AclWI	GGATC	2 cut(s)	368, 381
AcsI	RAATTY	2 cut(s)	72, 911
AdeI	CACNNNGTG	1 cut(s)	969
AfaI	GTAC	3 cut(s)	387, 766, 976
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	7 cut(s)	255, 323, 511, 744, 761, 853, 926
AhdI	GACNNNNNGTC	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	941, 985
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	3 cut(s)	193, 473, 1002
AluI	AGCT	3 cut(s)	193, 473, 1002
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	809, 834
AlwI	GGATC	2 cut(s)	368, 381
AoxI	GGCC	2 cut(s)	503, 989
ApeKI	GCWGC	5 cut(s)	23, 26, 281, 470, 485
ApoI	RAATTY	2 cut(s)	72, 911
Asp718I	GGTACC	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	936, 989
AsuHPI	GGTGA	3 cut(s)	413, 422, 868
AvaII	GGWCC	1 cut(s)	936
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	660
BbvI	GCAGC	5 cut(s)	35, 38, 268, 482, 497
BccI	CCATC	2 cut(s)	495, 509
BciT130I	CCWGG	2 cut(s)	943, 987
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	809, 834
BfaI	CTAG	3 cut(s)	498, 531, 800
BfrI	CTTAAG	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	5 cut(s)	24, 27, 282, 471, 486
BlsI	GCNGC	5 cut(s)	25, 28, 283, 472, 487
Bme1390I	CCNGG	2 cut(s)	943, 987
Bme18I	GGWCC	1 cut(s)	936
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	936, 989
BmiI	GGNNCC	2 cut(s)	375, 766
BmrFI	CCNGG	2 cut(s)	943, 987
BmsI	GCATC	1 cut(s)	888
BpiI	GAAGAC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
BpmI	CTGGAG	1 cut(s)	925
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	525, 986
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	3 cut(s)	30, 312, 703
BseBI	CCWGG	2 cut(s)	943, 987
BseDI	CCNNGG	2 cut(s)	525, 986
BseGI	GGATG	4 cut(s)	163, 520, 607, 903
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	4 cut(s)	89, 208, 393, 651
BseNI	ACTGG	3 cut(s)	30, 312, 703
BseRI	GAGGAG	2 cut(s)	216, 254
BseXI	GCAGC	5 cut(s)	35, 38, 268, 482, 497
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	505, 991
BshNI	GGYRCC	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	709, 970
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	809, 834
BsmFI	GGGAC	2 cut(s)	709, 970
BsmI	GAATGC	2 cut(s)	329, 921
BsnI	GGCC	2 cut(s)	505, 991
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	136, 373, 430, 788
BspACI	CCGC	2 cut(s)	150, 564
BspANI	GGCC	2 cut(s)	505, 991
BspCNI	CTCAG	4 cut(s)	90, 207, 392, 652
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	375, 766
BspPI	GGATC	2 cut(s)	368, 381
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	764
BspTI	CTTAAG	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	30, 312, 703
BssECI	CCNNGG	2 cut(s)	525, 986
BssMI	GATC	4 cut(s)	136, 373, 430, 788
Bst2UI	CCWGG	2 cut(s)	943, 987
Bst4CI	ACNGT	2 cut(s)	863, 967
Bst6I	CTCTTC	3 cut(s)	54, 193, 228
BstAFI	CTTAAG	1 cut(s)	476
BstDEI	CTNAG	5 cut(s)	98, 194, 298, 379, 660
BstF5I	GGATG	4 cut(s)	163, 520, 607, 903
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	139, 376, 433, 791
BstMAI	GTCTC	2 cut(s)	809, 834
BstMBI	GATC	4 cut(s)	136, 373, 430, 788
BstNI	CCWGG	2 cut(s)	943, 987
BstSCI	CCNGG	2 cut(s)	941, 985
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	5 cut(s)	35, 38, 268, 482, 497
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	505, 991
BtsCI	GGATG	4 cut(s)	163, 520, 607, 903
BtsIMutI	CAGTG	1 cut(s)	868
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	936, 989
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	3 cut(s)	386, 765, 975
CviAII	CATG	3 cut(s)	454, 585, 679
CviQI	GTAC	3 cut(s)	386, 765, 975
DdeI	CTNAG	5 cut(s)	98, 194, 298, 379, 660
DpnI	GATC	4 cut(s)	138, 375, 432, 790
DpnII	GATC	4 cut(s)	136, 373, 430, 788
DraIII	CACNNNGTG	1 cut(s)	969
DriI	GACNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	3 cut(s)	54, 193, 228
Eam1105I	GACNNNNNGTC	1 cut(s)	638
EarI	CTCTTC	3 cut(s)	54, 193, 228
EciI	GGCGGA	1 cut(s)	553
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	936
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRII	CCWGG	2 cut(s)	941, 985
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	3 cut(s)	457, 588, 682
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	2 cut(s)	709, 970
FatI	CATG	3 cut(s)	453, 584, 678
FauNDI	CATATG	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	5 cut(s)	24, 27, 282, 471, 486
FokI	GGATG	4 cut(s)	170, 527, 594, 910
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	5 cut(s)	24, 27, 282, 471, 486
FspBI	CTAG	3 cut(s)	498, 531, 800
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	5 cut(s)	24, 27, 282, 471, 486
GsuI	CTGGAG	1 cut(s)	925
HaeIII	GGCC	2 cut(s)	505, 991
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	457, 588, 682
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	242, 521, 842
HphI	GGTGA	3 cut(s)	413, 422, 868
Hpy166II	GTNNAC	4 cut(s)	632, 643, 676, 859
Hpy188I	TCNGA	3 cut(s)	197, 382, 526
Hpy188III	TCNNGA	4 cut(s)	97, 246, 313, 498
Hpy8I	GTNNAC	4 cut(s)	632, 643, 676, 859
HpyAV	CCTTC	5 cut(s)	187, 591, 755, 847, 1002
HpyCH4III	ACNGT	2 cut(s)	863, 967
HpyCH4IV	ACGT	2 cut(s)	55, 597
HpyCH4V	TGCA	7 cut(s)	145, 327, 438, 595, 811, 921, 963
HpyF3I	CTNAG	5 cut(s)	98, 194, 298, 379, 660
HpySE526I	ACGT	2 cut(s)	55, 597
Hsp92II	CATG	3 cut(s)	457, 588, 682
HspAI	GCGC	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	768
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	136, 373, 430, 788
LguI	GCTCTTC	1 cut(s)	228
Lsp1109I	GCAGC	5 cut(s)	35, 38, 268, 482, 497
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	3 cut(s)	498, 531, 800
MaeII	ACGT	2 cut(s)	55, 597
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	4 cut(s)	138, 375, 432, 790
MboI	GATC	4 cut(s)	136, 373, 430, 788
MboII	GAAGA	9 cut(s)	27, 33, 36, 41, 51, 210, 215, 218, 256
MfeI	CAATTG	4 cut(s)	234, 612, 720, 806
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	251, 836
MseI	TTAA	4 cut(s)	171, 477, 738, 836
MslI	CAYNNNNRTG	1 cut(s)	1027
MspCI	CTTAAG	1 cut(s)	476
MspR9I	CCNGG	2 cut(s)	943, 987
MunI	CAATTG	4 cut(s)	234, 612, 720, 806
Mva1269I	GAATGC	2 cut(s)	329, 921
MvaI	CCWGG	2 cut(s)	943, 987
MvnI	CGCG	1 cut(s)	121
NdeI	CATATG	1 cut(s)	689
NdeII	GATC	4 cut(s)	136, 373, 430, 788
NlaIII	CATG	3 cut(s)	457, 588, 682
NlaIV	GGNNCC	2 cut(s)	375, 766
NmuCI	GTSAC	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	2 cut(s)	329, 921
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	25, 28, 283, 472, 487
PleI	GAGTC	2 cut(s)	250, 836
PpsI	GAGTC	2 cut(s)	250, 836
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	941, 985
PspGI	CCWGG	2 cut(s)	941, 985
PspN4I	GGNNCC	2 cut(s)	375, 766
PspPI	GGNCC	2 cut(s)	936, 989
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	3 cut(s)	387, 766, 976
RsaNI	GTAC	3 cut(s)	386, 765, 975
RseI	CAYNNNNRTG	1 cut(s)	1027
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	171, 477, 738, 836
SatI	GCNGC	5 cut(s)	24, 27, 282, 471, 486
Sau3AI	GATC	4 cut(s)	136, 373, 430, 788
Sau96I	GGNCC	2 cut(s)	936, 989
SchI	GAGTC	2 cut(s)	251, 836
ScrFI	CCNGG	2 cut(s)	943, 987
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	888
SinI	GGWCC	1 cut(s)	936
SmiMI	CAYNNNNRTG	1 cut(s)	1027
SmlI	CTYRAG	2 cut(s)	286, 476
SmoI	CTYRAG	2 cut(s)	286, 476
SsiI	CCGC	2 cut(s)	150, 564
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	3 cut(s)	498, 531, 800
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	941, 985
TaaI	ACNGT	2 cut(s)	863, 967
TaiI	ACGT	2 cut(s)	58, 600
TaqI	TCGA	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	4 cut(s)	171, 477, 738, 836
Tru9I	TTAA	4 cut(s)	171, 477, 738, 836
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	5 cut(s)	23, 26, 281, 470, 485
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	6 cut(s)	27, 33, 65, 169, 318, 573
TspRI	CASTG	1 cut(s)	868
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	936
XapI	RAATTY	2 cut(s)	72, 911
XbaI	TCTAGA	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	631
XspI	CTAG	3 cut(s)	498, 531, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.