Rw1G018690

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001420
Physical Location & Seq
Reverse (-)
41192990 .. 41196629
3640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018690.1

Sequence Viewer

Length: 714 bp
ATGAGCACCGGAGATCTCCTCAGCATTCAGCCCACGGAGCTCAAATTCCCATTTGAACTGAAGAAGCAGAGCTCGTGTTCTTTGCAATTGACCAACAAAACAGATAAATATGTGGCCTTTAAGGTTAAGACAACCAATCCAAAGAAGTATTGTGTCAGACCCAATGCTGGTGTTGTTTTGCCTGGATCGACATGTGATGTTACAGTTACGATGCAAGCCCAAAAGGAGGCACCCCCAGATATGCAGTGTAAGGACAAATTTCTCCTTCAAAGTGTTGTTGCGCCAGATGGTTCAACTACAAAAGACATAACTCCTGAAATGTTCAACAAGGATGATGGTAAAGTTGTGGAAGAGTTCAAATTGCGGGTAATTTACTTTCCTGCCAACCCCCCATCACCTGTCCCTGAAGGATCTGATGAGGGCTCTTCTCCCAGGGCAGTGGTTGAGAATGGGACTCAAAATCCTTCCTTGTTTGATGCTGTGTCAAGATCTCTTGAGCAACCAAAAGAGAAATCTTCAGAGGCATGGTCTATGATATCCAAGTTGACCGAAGAGAAGACTTCTGCTTTACAACAAAACCAGAAACTACGTCAAGAACTGGAACTGGTGAGAAAAGAAATCAGCAAAAGCAGTGGTGGTGGATATTCATTAGTGTTTGTAGTGCTCTTTGGTCTTTTGGGTATCTTGGTTGGTTTCTTCATCAAGAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

237

Amino Acids

26.1

Weight (kDa)

8.55

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Motile_Sperm PF00635 7 - 110 2.4e-35 MSP (Major sperm protein) domain
Cep192_D6 PF22076 7 - 78 1.8e-07 Cep192 domain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 193, 418
AcsI RAATTY 2 cut(s) 44, 257
AcuI CTGAAG 3 cut(s) 80, 426, 501
AfiI CCNNNNNNNGG 2 cut(s) 167, 226
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 5 cut(s) 56, 269, 294, 325, 358
AjnI CCWGG 2 cut(s) 181, 431
AluBI AGCT 2 cut(s) 40, 72
AluI AGCT 2 cut(s) 40, 72
Alw21I GWGCWC 4 cut(s) 8, 42, 74, 666
AlwI GGATC 2 cut(s) 193, 418
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 44, 257
AspLEI GCGC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 387, 619
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 3 cut(s) 42, 74, 425
BauI CACGAG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 4 cut(s) 8, 42, 74, 666
BbvCI CCTCAGC 1 cut(s) 20
BccI CCATC 3 cut(s) 281, 329, 400
BciT130I CCWGG 2 cut(s) 183, 433
BglII AGATCT 2 cut(s) 13, 488
Bme1390I CCNGG 2 cut(s) 183, 433
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 183, 433
BmsI GCATC 2 cut(s) 201, 466
BpiI GAAGAC 1 cut(s) 563
BplI GAGNNNNNCTC 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 515
BsaJI CCNNGG 3 cut(s) 33, 431, 432
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 226
Bse1I ACTGG 2 cut(s) 603, 609
BseBI CCWGG 2 cut(s) 183, 433
BseDI CCNNGG 3 cut(s) 33, 431, 432
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 167, 226
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 603, 609
BseRI GAGGAG 1 cut(s) 8
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 4 cut(s) 8, 42, 74, 666
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 386, 466
BslI CCNNNNNNNGG 2 cut(s) 167, 226
BsmFI GGGAC 2 cut(s) 386, 466
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 5 cut(s) 8, 42, 74, 425, 666
Bsp143I GATC 4 cut(s) 13, 185, 410, 488
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 193, 418
BspQI GCTCTTC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 229
BsrI ACTGG 2 cut(s) 603, 609
BssECI CCNNGG 3 cut(s) 33, 431, 432
BssMI GATC 4 cut(s) 13, 185, 410, 488
BssSI CACGAG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 183, 433
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 3 cut(s) 345, 430, 546
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 4 cut(s) 16, 188, 413, 491
BstMBI GATC 4 cut(s) 13, 185, 410, 488
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 183, 433
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 181, 431
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 3 cut(s) 13, 410, 488
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 3 cut(s) 13, 410, 488
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 3 cut(s) 251, 444, 637
BtsIMutI CAGTG 3 cut(s) 251, 444, 637
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviAII CATG 2 cut(s) 192, 525
CviJI RGCY 6 cut(s) 31, 40, 72, 116, 218, 423
CviKI_1 RGCY 6 cut(s) 31, 40, 72, 116, 218, 423
DdeI CTNAG 1 cut(s) 20
DpnI GATC 4 cut(s) 15, 187, 412, 490
DpnII GATC 4 cut(s) 13, 185, 410, 488
Eam1104I CTCTTC 3 cut(s) 345, 430, 546
EarI CTCTTC 3 cut(s) 345, 430, 546
Ecl136II GAGCTC 2 cut(s) 40, 72
Eco24I GRGCYC 3 cut(s) 42, 74, 425
Eco32I GATATC 1 cut(s) 537
Eco53kI GAGCTC 2 cut(s) 40, 72
Eco57I CTGAAG 3 cut(s) 80, 426, 501
EcoICRI GAGCTC 2 cut(s) 40, 72
EcoRII CCWGG 2 cut(s) 181, 431
EcoRV GATATC 1 cut(s) 537
EcoT38I GRGCYC 3 cut(s) 42, 74, 425
FaeI CATG 2 cut(s) 195, 528
FaiI YATR 7 cut(s) 111, 193, 242, 308, 526, 533, 712
FaqI GGGAC 2 cut(s) 386, 466
FatI CATG 2 cut(s) 191, 524
FauI CCCGC 1 cut(s) 357
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 3 cut(s) 42, 74, 425
GlaI GCGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 283
Hin1II CATG 2 cut(s) 195, 528
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HinfI GANTC 1 cut(s) 454
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 387, 619
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 3 cut(s) 158, 415, 520
Hpy188III TCNNGA 5 cut(s) 314, 486, 494, 593, 703
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 3 cut(s) 275, 401, 474
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 3 cut(s) 85, 214, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 2 cut(s) 195, 528
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 4 cut(s) 13, 185, 410, 488
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 37
LweI GCATC 2 cut(s) 201, 466
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 2 cut(s) 199, 205
MalI GATC 4 cut(s) 15, 187, 412, 490
MboI GATC 4 cut(s) 13, 185, 410, 488
MboII GAAGA 7 cut(s) 73, 362, 417, 507, 563, 568, 688
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 3 cut(s) 13, 410, 488
MhlI GDGCHC 5 cut(s) 8, 42, 74, 425, 666
MluCI AATT 5 cut(s) 44, 86, 257, 359, 369
MlyI GAGTC 1 cut(s) 448
MnlI CCTC 4 cut(s) 29, 220, 412, 514
MseI TTAA 2 cut(s) 120, 126
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 183, 433
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 2 cut(s) 183, 433
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 4 cut(s) 13, 185, 410, 488
NlaIII CATG 2 cut(s) 195, 528
NlaIV GGNNCC 1 cut(s) 231
NspI RCATGY 1 cut(s) 195
PasI CCCWGGG 1 cut(s) 432
PciI ACATGT 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 430
PctI GAATGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PscI ACATGT 1 cut(s) 191
Psp124BI GAGCTC 2 cut(s) 42, 74
Psp6I CCWGG 2 cut(s) 181, 431
PspGI CCWGG 2 cut(s) 181, 431
PspN4I GGNNCC 1 cut(s) 231
PsuI RGATCY 3 cut(s) 13, 410, 488
SacI GAGCTC 2 cut(s) 42, 74
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 2 cut(s) 120, 126
Sau3AI GATC 4 cut(s) 13, 185, 410, 488
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 183, 433
SduI GDGCHC 5 cut(s) 8, 42, 74, 425, 666
SetI ASST 5 cut(s) 42, 74, 126, 400, 592
SfaNI GCATC 2 cut(s) 201, 466
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 5 cut(s) 44, 86, 257, 359, 369
SsiI CCGC 1 cut(s) 364
SstI GAGCTC 2 cut(s) 42, 74
StyD4I CCNGG 2 cut(s) 181, 431
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 592
TaqI TCGA 1 cut(s) 188
TaqII GACCGA 1 cut(s) 563
TasI AATT 5 cut(s) 44, 86, 257, 359, 369
Tru1I TTAA 2 cut(s) 120, 126
Tru9I TTAA 2 cut(s) 120, 126
TscAI CASTG 3 cut(s) 251, 444, 637
TspDTI ATGAA 2 cut(s) 636, 688
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 3 cut(s) 251, 444, 637
XapI RAATTY 2 cut(s) 44, 257
XceI RCATGY 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.