Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

42432757 .. 42436464

Gene Structure 3708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGCACCGGAGATCTCCTCAGCATTCAGCCCACGGAGCTCAAATTCCCGTTTGAACTGAAGAAGCAGAGCTCGTGTTCTTTGCAATTGACCAACAAAACAGATAAATATGTGGCCTTTAAGGTTAAGACAACCAATCCAAAGAAGTATTGTGTCAGACCCAATGCTGGTGTTGTTTTGCCCGGATCAACATGTGATGTTACAGTTACGATGCAAGCCCAAAAGGAGGCACCCCCAGATATGCAGTGTAAGGACAAATTTCTCCTTCAAAGTGTTGTTGCGCCAGATGGTTCAACCACAAAAGACATAACTCCTGAAATGTTCAACAAGGATGATGGTAAAGTTGTGGAAGAGTTCAAATTGCGGGTAATTTACTTTCCTGCCAACCCCCCGTCACCTGTCCCTGAAGGATCTGATGAGGGCTCTTCTCCCAGGGCAGTGGTTGAGAATGGGACTCAAAATCCTTCCTTGTTTGATGCTGTGTCAAGATCTCTTGAGCAACCAAAAGAGAAATCTTCAGAGGCATGGTCTATGATATCCAAGTTGACCGAAGAGAAGACTTCTGCTTTACAACAAAACCAGAAACTACGTCAAGAACTGGAACTGGTGAGAAAAGAAATCAGCAAAAGCAGTGGCGGTGGATATTCATTAGTGTTTGTAGTGCTCTTTGGTCTTTTGGGTATCTTGGTTGGTTTCTTCATCAAGAAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

237

Amino Acids

26.1

Weight (kDa)

8.55

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	2.4e-35	MSP (Major sperm protein) domain
Cep192_D6	PF22076	7 - 78	1.8e-07	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	2 cut(s)	364, 636
AclWI	GGATC	2 cut(s)	193, 418
AcsI	RAATTY	2 cut(s)	44, 257
AcuI	CTGAAG	3 cut(s)	80, 426, 501
AfiI	CCNNNNNNNGG	2 cut(s)	167, 226
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	56, 269, 294, 325, 358
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	40, 72
AluI	AGCT	2 cut(s)	40, 72
Alw21I	GWGCWC	4 cut(s)	8, 42, 74, 666
AlwI	GGATC	2 cut(s)	193, 418
AoxI	GGCC	1 cut(s)	114
ApoI	RAATTY	2 cut(s)	44, 257
AspLEI	GCGC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	387, 619
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	3 cut(s)	42, 74, 425
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	4 cut(s)	8, 42, 74, 666
BbvCI	CCTCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	281, 329
BciT130I	CCWGG	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	183
BglII	AGATCT	2 cut(s)	13, 488
Bme1390I	CCNGG	2 cut(s)	183, 433
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	183, 433
BmsI	GCATC	2 cut(s)	201, 466
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	33, 431, 432
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 226
Bse1I	ACTGG	2 cut(s)	603, 609
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	33, 431, 432
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	167, 226
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	2 cut(s)	603, 609
BseRI	GAGGAG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	4 cut(s)	8, 42, 74, 666
BsiSI	CCGG	2 cut(s)	9, 183
BslFI	GGGAC	2 cut(s)	386, 466
BslI	CCNNNNNNNGG	2 cut(s)	167, 226
BsmFI	GGGAC	2 cut(s)	386, 466
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	5 cut(s)	8, 42, 74, 425, 666
Bsp143I	GATC	4 cut(s)	13, 185, 410, 488
BspACI	CCGC	2 cut(s)	364, 636
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	193, 418
BspQI	GCTCTTC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	603, 609
BssECI	CCNNGG	3 cut(s)	33, 431, 432
BssMI	GATC	4 cut(s)	13, 185, 410, 488
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	3 cut(s)	345, 430, 546
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	16, 188, 413, 491
BstMBI	GATC	4 cut(s)	13, 185, 410, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	181, 431
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	3 cut(s)	13, 410, 488
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	3 cut(s)	13, 410, 488
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	3 cut(s)	251, 444, 637
BtsIMutI	CAGTG	3 cut(s)	251, 444, 637
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	2 cut(s)	192, 525
CviJI	RGCY	6 cut(s)	31, 40, 72, 116, 218, 423
CviKI_1	RGCY	6 cut(s)	31, 40, 72, 116, 218, 423
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	4 cut(s)	15, 187, 412, 490
DpnII	GATC	4 cut(s)	13, 185, 410, 488
Eam1104I	CTCTTC	3 cut(s)	345, 430, 546
EarI	CTCTTC	3 cut(s)	345, 430, 546
Ecl136II	GAGCTC	2 cut(s)	40, 72
Eco24I	GRGCYC	3 cut(s)	42, 74, 425
Eco32I	GATATC	1 cut(s)	537
Eco53kI	GAGCTC	2 cut(s)	40, 72
Eco57I	CTGAAG	3 cut(s)	80, 426, 501
EcoICRI	GAGCTC	2 cut(s)	40, 72
EcoRII	CCWGG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	537
EcoT38I	GRGCYC	3 cut(s)	42, 74, 425
FaeI	CATG	2 cut(s)	195, 528
FaiI	YATR	7 cut(s)	111, 193, 242, 308, 526, 533, 712
FaqI	GGGAC	2 cut(s)	386, 466
FatI	CATG	2 cut(s)	191, 524
FauI	CCCGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	3 cut(s)	42, 74, 425
GlaI	GCGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	2 cut(s)	9, 183
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	195, 528
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	9, 183
HphI	GGTGA	2 cut(s)	387, 619
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	3 cut(s)	158, 415, 520
Hpy188III	TCNNGA	5 cut(s)	314, 486, 494, 593, 703
Hpy8I	GTNNAC	1 cut(s)	546
HpyAV	CCTTC	3 cut(s)	275, 401, 474
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	3 cut(s)	85, 214, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	2 cut(s)	195, 528
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	13, 185, 410, 488
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	37
LweI	GCATC	2 cut(s)	201, 466
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	3 cut(s)	199, 205, 393
MalI	GATC	4 cut(s)	15, 187, 412, 490
MboI	GATC	4 cut(s)	13, 185, 410, 488
MboII	GAAGA	7 cut(s)	73, 362, 417, 507, 563, 568, 688
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	3 cut(s)	13, 410, 488
MhlI	GDGCHC	5 cut(s)	8, 42, 74, 425, 666
MluCI	AATT	5 cut(s)	44, 86, 257, 359, 369
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	4 cut(s)	29, 220, 412, 514
MseI	TTAA	2 cut(s)	120, 126
MspI	CCGG	2 cut(s)	9, 183
MspR9I	CCNGG	2 cut(s)	183, 433
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	4 cut(s)	13, 185, 410, 488
NlaIII	CATG	2 cut(s)	195, 528
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	393
NspI	RCATGY	1 cut(s)	195
PasI	CCCWGGG	1 cut(s)	432
PciI	ACATGT	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	2 cut(s)	42, 74
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	231
PsuI	RGATCY	3 cut(s)	13, 410, 488
SacI	GAGCTC	2 cut(s)	42, 74
SapI	GCTCTTC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	120, 126
Sau3AI	GATC	4 cut(s)	13, 185, 410, 488
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	183, 433
SduI	GDGCHC	5 cut(s)	8, 42, 74, 425, 666
SetI	ASST	5 cut(s)	42, 74, 126, 400, 592
SfaNI	GCATC	2 cut(s)	201, 466
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	5 cut(s)	44, 86, 257, 359, 369
SsiI	CCGC	2 cut(s)	364, 636
SstI	GAGCTC	2 cut(s)	42, 74
StyD4I	CCNGG	2 cut(s)	181, 431
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	592
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	5 cut(s)	44, 86, 257, 359, 369
Tru1I	TTAA	2 cut(s)	120, 126
Tru9I	TTAA	2 cut(s)	120, 126
TscAI	CASTG	3 cut(s)	251, 444, 637
TseFI	GTSAC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	2 cut(s)	636, 688
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	3 cut(s)	251, 444, 637
XapI	RAATTY	2 cut(s)	44, 257
XceI	RCATGY	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.