Rh4AG047500

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
9968213 .. 9969536
1324 bp
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UTR
Exon/CDS
Intron
Rh4AG047500.1

Sequence Viewer

Length: 282 bp
ATGTTGCTGACACAAGTGCAAGAAATATTGCTCGAATATAGTTTCTGTACAGTTACAGTGCAAGCACAGAAAGAGGCTGCTCCAGACATGCAATGCAAGGACAAGTTTCTCCTTCAGCGTGTAAAAACCAATGATGGTGCAACTATAAAGAAAATTACTCTAGAAGTGGTACTTGCATTACACAATGTTGTGGGTACTGATGTGCTGCAAAAGGTTTTTTGGAGCAGCTTGAAGCTCTGGAGAGATCTGCAGAGGTCAGATATCTGGTACTTTGAACAATAG

Protein Analysis

93

Amino Acids

10.85

Weight (kDa)

6.55

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 4 cut(s) 49, 171, 196, 269
AgsI TTSAA 2 cut(s) 232, 275
AluBI AGCT 2 cut(s) 228, 235
AluI AGCT 2 cut(s) 228, 235
ApeKI GCWGC 3 cut(s) 77, 205, 225
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BbvI GCAGC 3 cut(s) 64, 192, 237
BccI CCATC 1 cut(s) 128
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 248
BglII AGATCT 1 cut(s) 244
BisI GCNGC 3 cut(s) 78, 206, 226
BlsI GCNGC 3 cut(s) 79, 207, 227
BpmI CTGGAG 2 cut(s) 66, 259
Bse3DI GCAATG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 64, 192, 237
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 1 cut(s) 244
BspMAI CTGCAG 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 47
BssMI GATC 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 52, 58
BstAUI TGTACA 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 248
BstV1I GCAGC 3 cut(s) 64, 192, 237
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 63
Csp6I GTAC 4 cut(s) 48, 170, 195, 268
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 77, 228, 235
CviKI_1 RGCY 3 cut(s) 77, 228, 235
CviQI GTAC 4 cut(s) 48, 170, 195, 268
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 98
EcoRV GATATC 1 cut(s) 262
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 39, 89, 146
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 78, 206, 226
Fsp4HI GCNGC 3 cut(s) 78, 206, 226
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 78, 206, 226
GsuI CTGGAG 2 cut(s) 66, 259
Hin1II CATG 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 83, 161, 238
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 52, 58
HpyCH4V TGCA 8 cut(s) 19, 61, 91, 96, 140, 176, 208, 250
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 85, 222
LpnPI CCDG 3 cut(s) 96, 223, 250
Lsp1109I GCAGC 3 cut(s) 64, 192, 237
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MflI RGATCY 1 cut(s) 244
MluCI AATT 1 cut(s) 153
MnlI CCTC 2 cut(s) 67, 246
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 91
NspI RCATGY 1 cut(s) 91
PkrI GCNGC 3 cut(s) 79, 207, 227
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 4 cut(s) 49, 171, 196, 269
RsaNI GTAC 4 cut(s) 48, 170, 195, 268
SatI GCNGC 3 cut(s) 78, 206, 226
Sau3AI GATC 1 cut(s) 244
SetI ASST 4 cut(s) 216, 230, 237, 257
SfcI CTRYAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 153
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 52, 58
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 47
TscAI CASTG 1 cut(s) 63
TseI GCWGC 3 cut(s) 77, 205, 225
TspRI CASTG 1 cut(s) 63
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.