AT4G19420

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
10587166 .. 10591633
4468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19420.3

Sequence Viewer

Length: 1194 bp
ATGTTCAAGTTGAAGCAATGGTTGATTTATTTGGTGTGTTCGTTAGTAATAATGAACACAGAAGGACTGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGGGAGGAGGATGGTGCAATAATGTAACAAATTGCGTTAGTCGGATGCATACTCGATTAGGTTCATCGAAGAAAATGGTGGAGAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATTCACAGGAGATGTAGAAGCAGTGAACCCTGCTACTAATCTTCACTTCAGAGGTGCTCGAGTTTGGTTAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTGATAGTTTCCGTGCTCTATTACCGATGGGAACCAAAGTAAAATGTCTTTCAGATGCTGGTTTTTTTCTCAACACAAGAGACGTCTCAGGAGTTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCATGGATCAGCAAAGAACTTGCCGAGGTCATGCACATCAAGATTAACTCCTGCAATGTGTTTCTTTCCGCAATATGTGGCTCGCCAGATTAGAACTCCTCTGTTCATTCTTAATGCCGCTTATGACTCTTGGCAGATAAAGAACATTTTGGCTCCGCGAGCAGCTGATCCTTACGGAAAATGGCAAAGTTGTCAACTAGACATCAAGAATTGCCATCCAAGTCAGATCAAAGTTATGCAAGATTTCAGGTTAGAGTTCTTGAGTGCAGTGATAGGTTTAGGGAGATCTTCATCAAGAGGGATGTTCATAGATTCTTGCTACACTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCAAGATTCTCCAATTCTAAACCGAACGACAATAGCAAAAGCTGTTGGAGATTGGGTTTATGACAGAACATTGTTTCAGAAGATAGATTGTCCTTACCCTTGTAACCCTACTTGCCACCACAGGGTTTTCACTCCTCTAGATGCTCCTCCAATTTAA

Protein Analysis

397

Amino Acids

44.44

Weight (kDa)

8.97

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 19 - 245 1.6e-111 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 630
AccII CGCG 1 cut(s) 835
AciI CCGC 4 cut(s) 522, 746, 795, 833
AclWI GGATC 2 cut(s) 691, 839
AcuI CTGAAG 1 cut(s) 409
AcyI GRCGYC 1 cut(s) 627
AfiI CCNNNNNNNGG 1 cut(s) 1159
AgsI TTSAA 3 cut(s) 7, 13, 641
AhdI GACNNNNNGTC 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 8 cut(s) 140, 193, 296, 463, 470, 530, 842, 1079
AluI AGCT 8 cut(s) 140, 193, 296, 463, 470, 530, 842, 1079
Alw21I GWGCWC 2 cut(s) 436, 562
Alw26I GTCTC 3 cut(s) 618, 634, 1010
AlwI GGATC 2 cut(s) 691, 839
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 463, 839
AspS9I GGNCC 1 cut(s) 111
AsuII TTCGAA 2 cut(s) 91, 660
AsuNHI GCTAGC 1 cut(s) 466
AvaI CYCGRG 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 436, 562
BbvI GCAGC 2 cut(s) 450, 851
BccI CCATC 4 cut(s) 119, 201, 565, 900
BceAI ACGGC 2 cut(s) 98, 434
BcoDI GTCTC 3 cut(s) 618, 634, 1010
BfaI CTAG 3 cut(s) 467, 875, 1175
BglII AGATCT 1 cut(s) 962
BisI GCNGC 3 cut(s) 464, 795, 840
BlsI GCNGC 3 cut(s) 465, 796, 841
BmeRI GACNNNNNGTC 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 112, 577, 831
BmsI GCATC 5 cut(s) 231, 383, 528, 589, 1168
BmtI GCTAGC 1 cut(s) 470
Bpu14I TTCGAA 2 cut(s) 91, 660
BpuEI CTTGAG 2 cut(s) 215, 958
BsaBI GATNNNNATC 1 cut(s) 967
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 701
BsaXI ACNNNNNCTCC 2 cut(s) 1077, 1107
Bsc4I CCNNNNNNNGG 1 cut(s) 1159
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 2 cut(s) 23, 738
Bse8I GATNNNNATC 1 cut(s) 967
BseDI CCNNGG 1 cut(s) 701
BseGI GGATG 4 cut(s) 212, 246, 892, 984
BseJI GATNNNNATC 1 cut(s) 967
BseLI CCNNNNNNNGG 1 cut(s) 1159
BseMI GCAATG 2 cut(s) 23, 738
BseMII CTCAG 2 cut(s) 306, 645
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 4 cut(s) 216, 765, 1161, 1173
BseXI GCAGC 2 cut(s) 450, 851
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 1 cut(s) 835
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 436, 562
BsiHKCI CYCGRG 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 1159
BsmAI GTCTC 3 cut(s) 618, 634, 1010
BsmBI CGTCTC 2 cut(s) 618, 634
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 435
Bsp119I TTCGAA 2 cut(s) 91, 660
Bsp1286I GDGCHC 2 cut(s) 436, 562
Bsp143I GATC 4 cut(s) 683, 844, 903, 962
BspACI CCGC 4 cut(s) 522, 746, 795, 833
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 305, 644
BspFNI CGCG 1 cut(s) 835
BspLI GGNNCC 3 cut(s) 112, 577, 831
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 691, 839
BspT104I TTCGAA 2 cut(s) 91, 660
BsrDI GCAATG 2 cut(s) 23, 738
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 4 cut(s) 683, 844, 903, 962
BssNI GRCGYC 1 cut(s) 627
Bst4CI ACNGT 2 cut(s) 69, 365
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 463
BstBI TTCGAA 2 cut(s) 91, 660
BstC8I GCNNGC 4 cut(s) 468, 520, 760, 837
BstDEI CTNAG 3 cut(s) 292, 302, 631
BstF5I GGATG 4 cut(s) 212, 246, 892, 984
BstFNI CGCG 1 cut(s) 835
BstKTI GATC 4 cut(s) 686, 847, 906, 965
BstMAI GTCTC 3 cut(s) 618, 634, 1010
BstMBI GATC 4 cut(s) 683, 844, 903, 962
BstMWI GCNNNNNNNGC 5 cut(s) 110, 293, 463, 494, 836
BstUI CGCG 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 450, 851
BstX2I RGATCY 1 cut(s) 962
BstYI RGATCY 1 cut(s) 962
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 4 cut(s) 212, 246, 892, 984
BtsI GCAGTG 3 cut(s) 405, 951, 1003
BtsIMutI CAGTG 3 cut(s) 405, 951, 1003
Cac8I GCNNGC 4 cut(s) 468, 520, 760, 837
CaiI CAGNNNCTG 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 111
CviAII CATG 4 cut(s) 478, 680, 708, 1029
DdeI CTNAG 3 cut(s) 292, 302, 631
DpnI GATC 4 cut(s) 685, 846, 905, 964
DpnII GATC 4 cut(s) 683, 844, 903, 962
DriI GACNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 681
Eam1105I GACNNNNNGTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 681
Eco57I CTGAAG 1 cut(s) 409
Eco88I CYCGRG 1 cut(s) 435
EcoT22I ATGCAT 2 cut(s) 246, 543
Esp3I CGTCTC 2 cut(s) 618, 634
FaeI CATG 4 cut(s) 481, 683, 711, 1032
FatI CATG 4 cut(s) 477, 679, 707, 1028
FauI CCCGC 1 cut(s) 515
Fnu4HI GCNGC 3 cut(s) 464, 795, 840
FokI GGATG 4 cut(s) 219, 253, 879, 991
Fsp4HI GCNGC 3 cut(s) 464, 795, 840
FspBI CTAG 3 cut(s) 467, 875, 1175
GluI GCNGC 3 cut(s) 464, 795, 840
HaeIII GGCC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 4 cut(s) 481, 683, 711, 1032
HincII GTYRAC 1 cut(s) 872
HindII GTYRAC 1 cut(s) 872
HinfI GANTC 4 cut(s) 171, 803, 989, 1043
Hpy166II GTNNAC 3 cut(s) 134, 403, 872
Hpy188I TCNGA 5 cut(s) 240, 428, 598, 903, 1116
Hpy188III TCNNGA 8 cut(s) 162, 326, 633, 717, 883, 937, 972, 1175
Hpy8I GTNNAC 3 cut(s) 134, 403, 872
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 69, 365
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 8 cut(s) 213, 244, 457, 541, 711, 731, 916, 944
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 293, 463, 494, 836
HpyF3I CTNAG 3 cut(s) 292, 302, 631
HpySE526I ACGT 1 cut(s) 627
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 4 cut(s) 481, 683, 711, 1032
Kzo9I GATC 4 cut(s) 683, 844, 903, 962
LmnI GCTCC 2 cut(s) 835, 1186
Lsp1109I GCAGC 2 cut(s) 450, 851
LweI GCATC 5 cut(s) 231, 383, 528, 589, 1168
MaeI CTAG 3 cut(s) 467, 875, 1175
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 4 cut(s) 220, 365, 670, 1139
MalI GATC 4 cut(s) 685, 846, 905, 964
MboI GATC 4 cut(s) 683, 844, 903, 962
MboII GAAGA 6 cut(s) 277, 410, 668, 674, 957, 1129
MfeI CAATTG 1 cut(s) 337
MflI RGATCY 1 cut(s) 962
MhlI GDGCHC 2 cut(s) 436, 562
MluCI AATT 5 cut(s) 226, 337, 886, 1050, 1188
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 218, 1063
Mph1103I ATGCAT 2 cut(s) 246, 543
MseI TTAA 4 cut(s) 648, 722, 789, 1192
MspA1I CMGCKG 1 cut(s) 842
MunI CAATTG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 499
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 5 cut(s) 110, 293, 463, 494, 836
NdeII GATC 4 cut(s) 683, 844, 903, 962
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 4 cut(s) 481, 683, 711, 1032
NlaIV GGNNCC 3 cut(s) 112, 577, 831
NmeAIII GCCGAG 2 cut(s) 514, 726
NmuCI GTSAC 1 cut(s) 365
NsiI ATGCAT 2 cut(s) 246, 543
NspV TTCGAA 2 cut(s) 91, 660
PaeR7I CTCGAG 1 cut(s) 435
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 3 cut(s) 171, 989, 1043
PkrI GCNGC 3 cut(s) 465, 796, 841
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PspN4I GGNNCC 3 cut(s) 112, 577, 831
PspPI GGNCC 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 842
SaqAI TTAA 4 cut(s) 648, 722, 789, 1192
SatI GCNGC 3 cut(s) 464, 795, 840
Sau3AI GATC 4 cut(s) 683, 844, 903, 962
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 797
SduI GDGCHC 2 cut(s) 436, 562
SfaNI GCATC 5 cut(s) 231, 383, 528, 589, 1168
Sfr274I CTCGAG 1 cut(s) 435
SfuI TTCGAA 2 cut(s) 91, 660
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 3 cut(s) 194, 435, 937
SmoI CTYRAG 3 cut(s) 194, 435, 937
Sse9I AATT 5 cut(s) 226, 337, 886, 1050, 1188
SsiI CCGC 4 cut(s) 522, 746, 795, 833
SspI AATATT 1 cut(s) 79
SspMI CTAG 3 cut(s) 467, 875, 1175
TaaI ACNGT 2 cut(s) 69, 365
TaiI ACGT 1 cut(s) 630
TaqI TCGA 5 cut(s) 91, 250, 263, 436, 660
TasI AATT 5 cut(s) 226, 337, 886, 1050, 1188
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 3 cut(s) 171, 989, 1043
Tru1I TTAA 4 cut(s) 648, 722, 789, 1192
Tru9I TTAA 4 cut(s) 648, 722, 789, 1192
TscAI CASTG 3 cut(s) 405, 951, 1010
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 463, 839
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 7 cut(s) 68, 249, 668, 772, 957, 973, 1017
TspGWI ACGGA 2 cut(s) 545, 867
TspRI CASTG 3 cut(s) 405, 951, 1010
XbaI TCTAGA 1 cut(s) 1174
XhoI CTCGAG 1 cut(s) 435
XspI CTAG 3 cut(s) 467, 875, 1175
ZraI GACGTC 1 cut(s) 628
Zsp2I ATGCAT 2 cut(s) 246, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.