Rorug07G0148800

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
11788175 .. 11789683
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0148800.1

Sequence Viewer

Length: 1509 bp
ATGTTAGCCAAACAGGCTTGGCGCGTGCTTCTTAATCCTTCTTCTCTAGTTGCTCGTATGTATAAGGCAAAGTATTTTCCAGATGTCTCGTTTTGGGAGGCTACTCCTCATGCTTCACCTTCCTATTCCTGGAGAAGTATATTTTCTACACGGGATTTGCTTCAGGAATGTTGTTGTTGGCAAGTGGGGGATGGGAAGGATATTGGAATTTTTTCTTCTAATTGGATTCCGGCTTTACCTAATGGGAAACCGTCAGCCACAGGCTTGGCTCAACGGGAAGTAACATTGGTGGAGGATTTAATTGTGGAGACAGGGGTGTGGGATGAGGCCAAAATCTTGCGGCTGTTTTCGATGGAGGAAGCAGTGGCTATTATTAATATTCCTTTGAGTCGAAGGGTGGTAAATGATAGGTTGACCAAGGATGGTAAGTTCTCTGTGAAATCGACCTACCATTTTTCGTTTTCTAATTCTTCTCATTTTAATCCCATCCTATCGTCTGTGGGAGCACCTTTTTGGAAGAAGATTTGGAAATCATCTATTCCAAATAAGGCAAAGATTCATATGTGGAGGGTATGTTTGGATATTTTGCCTTCTCTTGTTAAGTTGGAGTCGAGAAGGGTGCAGTTAGAGTCCTTGATGTGTGTGTTATGTGAGACATATCAGGAGTCCACTTTACATCTTTGTAAGGATTGTGCTTTCACTCAGAGGGTGTTGCAGTCCAATATGGTTTTGAGACAGGTTTGCTATGGACCTCAACATGAAGGCCGAGATTTGCTTCAATGGTTAGCTGCATGTGCGGCGGAGTTGTCTCCAACAAGCTTTGGAGACTTTCTGTTTCTTCTGTATGGGATTTGGAAGGAGAGAAATGATCGGGTTTGGGACCAAAAGAAGGGGGATGCAAGTGATGTGGTGATTCGGACGATGTCTAGATTACAGGAATATCGGTTTCATACCTTGAACAATGGGGAAGGAAAGATTAGACGAAGCAGGGTGGTGCGGTGGGTTGCACCTCCGGTGGGTTTTTTGAAGATTAATGTCGACGGGGCATTCGATCATGTGACCCGAAAGGGGGGAGCGGGCTTTGTGATTCGTAATGAACTTGGGGTTATGCTGGCAGGAGGAGCTTGTCCTCTCACTGGGTTATTGTCTCCGGAGCACGGGGAGGTGCTAGCTTGTAAGAAGGCAATGGAATTTGTGCTGGACCATACTTTCTTTCCTGCCATATTGGAGACAGATGCGTTGGTAGTTCAAGGTCAGCTGAGTGTTTCTACTACTGGTAATACGTCCGTTCTGGGACGATTATATGATGATATGGTGACTATGTTGCAGACTCATTCTTTTGTGAAGGTGACTCATGTAGGCCGCCTGGGCAATGGTATAGCCCATCAGTTAGCAGCTTATGCTTGCTCTTTGCAGCAAGATTGTTTTTTATTTTTCTACTCCTCCATTTCTTTCAGCTGCCGTTGCAGCGGAACTTTGTATGGTTTGATTGATTTTCTATTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

56.42

Weight (kDa)

8.69

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 144 - 237 5.5e-14 zinc-binding in reverse transcriptase
RVT_3 PF13456 345 - 468 6e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1076
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 1150
AciI CCGC 7 cut(s) 340, 797, 800, 997, 1076, 1363, 1470
AcsI RAATTY 2 cut(s) 207, 1190
AcuI CTGAAG 1 cut(s) 146
AfiI CCNNNNNNNGG 7 cut(s) 129, 889, 1016, 1068, 1069, 1136, 1157
AgsI TTSAA 4 cut(s) 779, 958, 1027, 1250
AjnI CCWGG 2 cut(s) 128, 1365
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 7 cut(s) 788, 819, 1124, 1172, 1258, 1397, 1458
AluI AGCT 7 cut(s) 788, 819, 1124, 1172, 1258, 1397, 1458
Alw21I GWGCWC 2 cut(s) 508, 1158
Alw26I GTCTC 8 cut(s) 91, 302, 647, 727, 813, 819, 1152, 1223
Aor13HI TCCGGA 1 cut(s) 1150
AoxI GGCC 3 cut(s) 327, 763, 1360
ApeKI GCWGC 5 cut(s) 788, 1394, 1414, 1458, 1467
ApoI RAATTY 2 cut(s) 207, 1190
ArsI GACNNNNNNTTYG 2 cut(s) 1031, 1063
AseI ATTAAT 2 cut(s) 375, 1032
Asp700I GAANNNNTTC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 749, 880, 1201
AsuHPI GGTGA 4 cut(s) 108, 922, 1327, 1360
AsuNHI GCTAGC 1 cut(s) 1168
AvaII GGWCC 3 cut(s) 749, 880, 1201
Bbv12I GWGCWC 2 cut(s) 508, 1158
BbvI GCAGC 5 cut(s) 775, 1406, 1426, 1445, 1479
BccI CCATC 5 cut(s) 185, 346, 416, 494, 1392
BceAI ACGGC 1 cut(s) 1446
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 2 cut(s) 130, 1367
BcoDI GTCTC 8 cut(s) 91, 302, 647, 727, 813, 819, 1152, 1223
BfaI CTAG 3 cut(s) 47, 927, 1169
BglI GCCNNNNNGGC 2 cut(s) 14, 1368
BisI GCNGC 8 cut(s) 341, 789, 798, 1363, 1395, 1415, 1459, 1468
BlsI GCNGC 8 cut(s) 342, 790, 799, 1364, 1396, 1416, 1460, 1469
Bme1390I CCNGG 2 cut(s) 130, 1367
Bme18I GGWCC 3 cut(s) 749, 880, 1201
BmgT120I GGNCC 3 cut(s) 749, 880, 1201
BmiI GGNNCC 1 cut(s) 881
BmrFI CCNGG 2 cut(s) 130, 1367
BmrI ACTGGG 1 cut(s) 1146
BmsI GCATC 2 cut(s) 886, 1225
BmtI GCTAGC 1 cut(s) 1172
BmuI ACTGGG 1 cut(s) 1146
BpmI CTGGAG 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 417, 1366
BsaWI WCCGGW 2 cut(s) 1012, 1150
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 7 cut(s) 129, 889, 1016, 1068, 1069, 1136, 1157
Bse1I ACTGG 2 cut(s) 1141, 1279
Bse3DI GCAATG 2 cut(s) 1191, 1378
BseAI TCCGGA 1 cut(s) 1150
BseBI CCWGG 2 cut(s) 130, 1367
BseDI CCNNGG 2 cut(s) 417, 1366
BseGI GGATG 5 cut(s) 196, 328, 427, 486, 901
BseLI CCNNNNNNNGG 7 cut(s) 129, 889, 1016, 1068, 1069, 1136, 1157
BseMI GCAATG 2 cut(s) 1191, 1378
BseMII CTCAG 2 cut(s) 716, 1250
BseNI ACTGG 2 cut(s) 1141, 1279
BseRI GAGGAG 3 cut(s) 96, 1134, 1432
BseXI GCAGC 5 cut(s) 775, 1406, 1426, 1445, 1479
BsgI GTGCAG 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 3 cut(s) 329, 765, 1362
BsiHKAI GWGCWC 2 cut(s) 508, 1158
BsiSI CCGG 3 cut(s) 230, 1013, 1151
BslFI GGGAC 2 cut(s) 893, 1308
BslI CCNNNNNNNGG 7 cut(s) 129, 889, 1016, 1068, 1069, 1136, 1157
BsmAI GTCTC 8 cut(s) 91, 302, 647, 727, 813, 819, 1152, 1223
BsmFI GGGAC 2 cut(s) 893, 1308
BsmI GAATGC 1 cut(s) 1046
BsnI GGCC 3 cut(s) 329, 765, 1362
Bsp1286I GDGCHC 2 cut(s) 508, 1158
Bsp13I TCCGGA 1 cut(s) 1150
Bsp143I GATC 2 cut(s) 868, 1051
BspACI CCGC 7 cut(s) 340, 797, 800, 997, 1076, 1363, 1470
BspANI GGCC 3 cut(s) 329, 765, 1362
BspCNI CTCAG 2 cut(s) 715, 1251
BspEI TCCGGA 1 cut(s) 1150
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 881
BspOI GCTAGC 1 cut(s) 1172
BsrBI CCGCTC 1 cut(s) 1076
BsrDI GCAATG 2 cut(s) 1191, 1378
BsrI ACTGG 2 cut(s) 1141, 1279
BssECI CCNNGG 2 cut(s) 417, 1366
BssMI GATC 2 cut(s) 868, 1051
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 130, 1367
Bst4CI ACNGT 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 1400
BstC8I GCNNGC 5 cut(s) 26, 1078, 1113, 1170, 1405
BstDEI CTNAG 2 cut(s) 702, 1259
BstF5I GGATG 5 cut(s) 196, 328, 427, 486, 901
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 2 cut(s) 871, 1054
BstMAI GTCTC 8 cut(s) 91, 302, 647, 727, 813, 819, 1152, 1223
BstMBI GATC 2 cut(s) 868, 1051
BstMWI GCNNNNNNNGC 8 cut(s) 14, 794, 797, 1121, 1368, 1400, 1464, 1467
BstNI CCWGG 2 cut(s) 130, 1367
BstNSI RCATGY 1 cut(s) 795
BstSCI CCNGG 2 cut(s) 128, 1365
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 5 cut(s) 775, 1406, 1426, 1445, 1479
BstXI CCANNNNNNTGG 1 cut(s) 265
BsuRI GGCC 3 cut(s) 329, 765, 1362
BtsCI GGATG 5 cut(s) 196, 328, 427, 486, 901
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 369, 1134
Cac8I GCNNGC 5 cut(s) 26, 1078, 1113, 1170, 1405
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 749, 880, 1201
CspCI CAANNNNNGTGG 2 cut(s) 888, 923
CviAII CATG 5 cut(s) 110, 758, 792, 1055, 1355
DdeI CTNAG 2 cut(s) 702, 1259
DpnI GATC 2 cut(s) 870, 1053
DpnII GATC 2 cut(s) 868, 1051
EciI GGCGGA 1 cut(s) 815
Eco130I CCWWGG 1 cut(s) 417
Eco47I GGWCC 3 cut(s) 749, 880, 1201
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 128, 1365
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 5 cut(s) 113, 761, 795, 1058, 1358
FaqI GGGAC 2 cut(s) 893, 1308
FatI CATG 5 cut(s) 109, 757, 791, 1054, 1354
FauI CCCGC 1 cut(s) 1069
FauNDI CATATG 1 cut(s) 561
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 8 cut(s) 341, 789, 798, 1363, 1395, 1415, 1459, 1468
FokI GGATG 5 cut(s) 203, 335, 434, 473, 908
Fsp4HI GCNGC 8 cut(s) 341, 789, 798, 1363, 1395, 1415, 1459, 1468
FspBI CTAG 3 cut(s) 47, 927, 1169
GlaI GCGC 1 cut(s) 23
GluI GCNGC 8 cut(s) 341, 789, 798, 1363, 1395, 1415, 1459, 1468
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 3 cut(s) 329, 765, 1362
HapII CCGG 3 cut(s) 230, 1013, 1151
HhaI GCGC 1 cut(s) 24
Hin1II CATG 5 cut(s) 113, 761, 795, 1058, 1358
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 2 cut(s) 414, 1039
HindII GTYRAC 2 cut(s) 414, 1039
HindIII AAGCTT 1 cut(s) 817
HpaII CCGG 3 cut(s) 230, 1013, 1151
HphI GGTGA 4 cut(s) 108, 922, 1327, 1360
Hpy166II GTNNAC 3 cut(s) 414, 669, 1039
Hpy188I TCNGA 2 cut(s) 705, 918
Hpy188III TCNNGA 6 cut(s) 80, 164, 612, 662, 927, 1151
Hpy8I GTNNAC 3 cut(s) 414, 669, 1039
Hpy99I CGWCG 1 cut(s) 1043
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 1283
HpyCH4V TGCA 9 cut(s) 622, 715, 791, 899, 1007, 1327, 1414, 1467, 1504
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 794, 797, 1121, 1368, 1400, 1464, 1467
HpyF3I CTNAG 2 cut(s) 702, 1259
HpySE526I ACGT 1 cut(s) 1283
Hsp92II CATG 5 cut(s) 113, 761, 795, 1058, 1358
HspAI GCGC 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 1150
Kzo9I GATC 2 cut(s) 868, 1051
LmnI GCTCC 4 cut(s) 503, 1073, 1121, 1153
Lsp1109I GCAGC 5 cut(s) 775, 1406, 1426, 1445, 1479
LweI GCATC 2 cut(s) 886, 1225
MaeI CTAG 3 cut(s) 47, 927, 1169
MaeII ACGT 1 cut(s) 1283
MaeIII GTNAC 4 cut(s) 280, 1057, 1315, 1348
MalI GATC 2 cut(s) 870, 1053
MbiI CCGCTC 1 cut(s) 1076
MboI GATC 2 cut(s) 868, 1051
MboII GAAGA 7 cut(s) 33, 207, 462, 529, 532, 830, 1039
MhlI GDGCHC 2 cut(s) 508, 1158
MluCI AATT 5 cut(s) 207, 220, 300, 466, 1190
MlyI GAGTC 6 cut(s) 397, 617, 638, 674, 1324, 1345
MmeI TCCRAC 2 cut(s) 585, 836
MroI TCCGGA 1 cut(s) 1150
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 6 cut(s) 33, 299, 375, 480, 600, 1032
MspA1I CMGCKG 3 cut(s) 1258, 1458, 1470
MspI CCGG 3 cut(s) 230, 1013, 1151
MspR9I CCNGG 2 cut(s) 130, 1367
Mva1269I GAATGC 1 cut(s) 1046
MvaI CCWGG 2 cut(s) 130, 1367
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 8 cut(s) 14, 794, 797, 1121, 1368, 1400, 1464, 1467
NdeI CATATG 1 cut(s) 561
NdeII GATC 2 cut(s) 868, 1051
NheI GCTAGC 1 cut(s) 1168
NlaIII CATG 5 cut(s) 113, 761, 795, 1058, 1358
NlaIV GGNNCC 1 cut(s) 881
NmeAIII GCCGAG 1 cut(s) 791
NmuCI GTSAC 3 cut(s) 1057, 1315, 1348
NspI RCATGY 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PctI GAATGC 1 cut(s) 1046
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 4 cut(s) 226, 556, 913, 1087
PflFI GACNNNGTC 1 cut(s) 922
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 8 cut(s) 342, 790, 799, 1364, 1396, 1416, 1460, 1469
PleI GAGTC 6 cut(s) 396, 616, 637, 673, 1324, 1345
PpsI GAGTC 6 cut(s) 396, 616, 637, 673, 1324, 1345
PshBI ATTAAT 2 cut(s) 375, 1032
Psp6I CCWGG 2 cut(s) 128, 1365
PspGI CCWGG 2 cut(s) 128, 1365
PspN4I GGNNCC 1 cut(s) 881
PspPI GGNCC 3 cut(s) 749, 880, 1201
PsyI GACNNNGTC 1 cut(s) 922
PvuII CAGCTG 2 cut(s) 1258, 1458
SalI GTCGAC 1 cut(s) 1037
SaqAI TTAA 6 cut(s) 33, 299, 375, 480, 600, 1032
SatI GCNGC 8 cut(s) 341, 789, 798, 1363, 1395, 1415, 1459, 1468
Sau3AI GATC 2 cut(s) 868, 1051
Sau96I GGNCC 3 cut(s) 749, 880, 1201
SchI GAGTC 6 cut(s) 397, 617, 638, 674, 1324, 1345
ScrFI CCNGG 2 cut(s) 130, 1367
SduI GDGCHC 2 cut(s) 508, 1158
SfaNI GCATC 2 cut(s) 886, 1225
SinI GGWCC 3 cut(s) 749, 880, 1201
Sse9I AATT 5 cut(s) 207, 220, 300, 466, 1190
SsiI CCGC 7 cut(s) 340, 797, 800, 997, 1076, 1363, 1470
SspI AATATT 1 cut(s) 379
SspMI CTAG 3 cut(s) 47, 927, 1169
StyD4I CCNGG 2 cut(s) 128, 1365
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 1 cut(s) 1286
TaqI TCGA 6 cut(s) 350, 391, 443, 611, 1038, 1050
TasI AATT 5 cut(s) 207, 220, 300, 466, 1190
TauI GCSGC 3 cut(s) 343, 800, 1365
TfiI GAWTC 4 cut(s) 226, 556, 913, 1087
Tru1I TTAA 6 cut(s) 33, 299, 375, 480, 600, 1032
Tru9I TTAA 6 cut(s) 33, 299, 375, 480, 600, 1032
TscAI CASTG 2 cut(s) 369, 1141
TseFI GTSAC 3 cut(s) 1057, 1315, 1348
TseI GCWGC 5 cut(s) 788, 1394, 1414, 1458, 1467
Tsp45I GTSAC 3 cut(s) 1057, 1315, 1348
TspDTI ATGAA 4 cut(s) 548, 774, 938, 1110
TspGWI ACGGA 1 cut(s) 1276
TspRI CASTG 2 cut(s) 369, 1141
Tth111I GACNNNGTC 1 cut(s) 922
VpaK11BI GGWCC 3 cut(s) 749, 880, 1201
VspI ATTAAT 2 cut(s) 375, 1032
XapI RAATTY 2 cut(s) 207, 1190
XbaI TCTAGA 1 cut(s) 926
XceI RCATGY 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 1038
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 3 cut(s) 47, 927, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.