Rh2CG026400

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000996
Physical Location & Seq
Reverse (-)
2035614 .. 2037096
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG026400.1

Sequence Viewer

Length: 378 bp
ATGGGCGATGCAAGATTAGCGCAATGGTTGAATCTTCTAGTATGTTCAGTGATAATGCAGAAAGCAACGGGAGTTCCTGTCAGAATCACTGTCCTTCAGACTGCGGTCCCCAAAGGAGCTGTTTGTTTGGATGAGAGCCCCCCAGCTTACCATTGGGATAAGGGGTTTGGTTCAGGAGTTAACAATTGGTTGGTTCACATTGAGGGAGAAGGATGGTGTAACAATGTCACAAATTGCCTCGGCCGTAAGAACACTTGTTTACGTTCATCAAAGCAAATGCTGAAGGAAATTCCTTTTTCTGGAATTCTGAGCAACAGGCAATCACTTAATCCAGGTTCTATACTCCATCCCCCAAGTTCCCTGATGCCATGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
PAE

Protein Analysis

125

Amino Acids

13.61

Weight (kDa)

8.86

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 22 - 111 2.1e-33 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 2 cut(s) 288, 303
AcuI CTGAAG 2 cut(s) 80, 302
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 119, 146
AluI AGCT 2 cut(s) 119, 146
AoxI GGCC 1 cut(s) 241
ApoI RAATTY 2 cut(s) 288, 303
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 140
BccI CCATC 2 cut(s) 207, 354
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 333
BfaI CTAG 2 cut(s) 38, 376
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 354
BoxI GACNNNNGTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 3 cut(s) 136, 218, 346
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 299
BseX3I CGGCCG 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 140
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 3 cut(s) 136, 218, 346
BstHHI GCGC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 333
BstPAI GACNNNNGTC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 331
BstZI CGGCCG 1 cut(s) 241
BsuRI GGCC 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 136, 218, 346
BtsIMutI CAGTG 2 cut(s) 54, 87
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 1 cut(s) 369
CviJI RGCY 4 cut(s) 119, 138, 146, 243
CviKI_1 RGCY 4 cut(s) 119, 138, 146, 243
DdeI CTNAG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 241
EagI CGGCCG 1 cut(s) 241
EclXI CGGCCG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 106
Eco52I CGGCCG 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 80, 302
EcoRI GAATTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 1 cut(s) 372
FaiI YATR 3 cut(s) 43, 341, 370
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 368
FokI GGATG 3 cut(s) 143, 225, 333
FriOI GRGCYC 1 cut(s) 140
FspBI CTAG 2 cut(s) 38, 376
GlaI GCGC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 243
HhaI GCGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 372
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 31, 84
HpaI GTTAAC 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 181, 196, 260
Hpy188I TCNGA 3 cut(s) 83, 99, 309
Hpy188III TCNNGA 2 cut(s) 174, 300
Hpy8I GTNNAC 3 cut(s) 181, 196, 260
HpyAV CCTTC 3 cut(s) 104, 203, 277
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 11, 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 1 cut(s) 372
HspAI GCGC 1 cut(s) 20
KspAI GTTAAC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 8 cut(s) 90, 156, 159, 285, 301, 318, 345, 374
LweI GCATC 1 cut(s) 354
MaeI CTAG 2 cut(s) 38, 376
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 218, 226
MboII GAAGA 1 cut(s) 26
MfeI CAATTG 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 4 cut(s) 184, 232, 288, 303
MnlI CCTC 2 cut(s) 196, 248
MseI TTAA 2 cut(s) 180, 327
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 31, 84
PshAI GACNNNNGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 180, 327
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 140
SetI ASST 4 cut(s) 121, 148, 265, 337
SfaNI GCATC 1 cut(s) 354
SinI GGWCC 1 cut(s) 106
Sse9I AATT 4 cut(s) 184, 232, 288, 303
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 38, 376
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 265
TasI AATT 4 cut(s) 184, 232, 288, 303
TfiI GAWTC 2 cut(s) 31, 84
Tru1I TTAA 2 cut(s) 180, 327
Tru9I TTAA 2 cut(s) 180, 327
TscAI CASTG 2 cut(s) 54, 94
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 2 cut(s) 54, 94
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 288, 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XspI CTAG 2 cut(s) 38, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.