Rh7AG286100

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000996
Physical Location & Seq
Reverse (-)
30650882 .. 30655495
4614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG286100.1

Sequence Viewer

Length: 714 bp
ATGAGGAAAGCTGAAAATGCTGTCCTCTCCGGTTGTTCTGCTGGTGGATTGGCCTCCATTCTTCATTGTGATAACTTCCGTGCTCTCTTACCTTCCGGAACCATTGTGAAATGTGTTTCAGATGCTGGTTACTTTATCAATGTAAAGGACATTTCTGGAGCACAACACATTCAACAGTATTTTGCTGATGTTGTTACAACACATGGTTCTGCGAAGAATTTGCCTCCATCTTGCACTTCAAAATTGAGACCAGATTTGTGTTTCTTCCCTCAATATGTGGTACCACAGATTCGGACACCAATATTCTATGTACATTCAGCCTATGATTCATGGCAGATAAGGAACATTTTGGTACCAGGTGTTGCGGATCCTCATGGAACTTGGCGAAACTGCAAGCTCAATATAAAGAACTGCTCACCCGCTCAGCTCAAAACCATTGAAAGCTTCAGGTTGCAATTTTTAACTGCAATTGGTGGTGTGAGCAACTCTGCAGTAAAGGGAATGTTCATAGACTCTTGCTATCTACACTGTCAAACTGAAATGCAGGAGACTTGGTTAATGCCTAATTCTCCACTCCTTAACAAAATGACAATTGCAGGGGCAGTTAGAGACTGGTTTTATGACCGAACTCCATTCCAAAAGATAGACTGTCCTTACTCTTGCAATCCCACTTGCCATCCTCCGATGTTTGATCCAAATGTGCACTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
PAE

Protein Analysis

237

Amino Acids

26.42

Weight (kDa)

8.24

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 1 - 226 1.7e-98 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 280, 352
AccB1I GGYRCC 2 cut(s) 280, 352
AccBSI CCGCTC 1 cut(s) 422
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 2 cut(s) 365, 420
AclWI GGATC 3 cut(s) 362, 375, 686
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 3 cut(s) 282, 312, 354
AgsI TTSAA 3 cut(s) 173, 240, 440
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 11, 397, 427, 444
AluI AGCT 4 cut(s) 11, 397, 427, 444
Alw21I GWGCWC 3 cut(s) 85, 163, 705
Alw26I GTCTC 3 cut(s) 241, 542, 603
Alw44I GTGCAC 1 cut(s) 701
AlwI GGATC 3 cut(s) 362, 375, 686
AlwNI CAGNNNCTG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 95
AoxI GGCC 1 cut(s) 51
ApaLI GTGCAC 1 cut(s) 701
ApoI RAATTY 1 cut(s) 217
Asp718I GGTACC 2 cut(s) 280, 352
AsuHPI GGTGA 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 705
BamHI GGATCC 1 cut(s) 367
BanI GGYRCC 2 cut(s) 280, 352
Bbv12I GWGCWC 3 cut(s) 85, 163, 705
BccI CCATC 2 cut(s) 235, 684
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 241, 542, 603
BfmI CTRYAG 1 cut(s) 489
BlpI GCTNAGC 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 357
BmiI GGNNCC 4 cut(s) 100, 282, 354, 369
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 241
BsaWI WCCGGW 2 cut(s) 29, 95
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bse1I ACTGG 1 cut(s) 617
BseAI TCCGGA 1 cut(s) 95
BseBI CCWGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 676
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 705
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 2 cut(s) 280, 352
BsiHKAI GWGCWC 3 cut(s) 85, 163, 705
BsiSI CCGG 2 cut(s) 30, 96
BsmAI GTCTC 3 cut(s) 241, 542, 603
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 3 cut(s) 85, 163, 705
Bsp13I TCCGGA 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 367, 691
Bsp1720I GCTNAGC 1 cut(s) 423
BspACI CCGC 2 cut(s) 365, 420
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 436
BspEI TCCGGA 1 cut(s) 95
BspLI GGNNCC 4 cut(s) 100, 282, 354, 369
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 3 cut(s) 362, 375, 686
BspT107I GGYRCC 2 cut(s) 280, 352
BspTNI GGTCTC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 617
BssMI GATC 2 cut(s) 367, 691
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 177, 530, 650
BstAUI TGTACA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 676
BstKTI GATC 2 cut(s) 370, 694
BstMAI GTCTC 3 cut(s) 241, 542, 603
BstMBI GATC 2 cut(s) 367, 691
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 705
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 676
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 395
CaiI CAGNNNCTG 1 cut(s) 125
CsiI ACCWGGT 1 cut(s) 355
Csp6I GTAC 3 cut(s) 281, 311, 353
CviAII CATG 3 cut(s) 203, 330, 374
CviJI RGCY 6 cut(s) 11, 53, 320, 397, 427, 444
CviKI_1 RGCY 6 cut(s) 11, 53, 320, 397, 427, 444
CviQI GTAC 3 cut(s) 281, 311, 353
DdeI CTNAG 1 cut(s) 423
DpnI GATC 2 cut(s) 369, 693
DpnII GATC 2 cut(s) 367, 691
Eco31I GGTCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 3 cut(s) 206, 333, 377
FaiI YATR 9 cut(s) 204, 276, 309, 324, 331, 375, 404, 509, 621
FatI CATG 3 cut(s) 202, 329, 373
FauI CCCGC 1 cut(s) 427
FokI GGATG 1 cut(s) 663
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 53
HapII CCGG 2 cut(s) 30, 96
Hin1II CATG 3 cut(s) 206, 333, 377
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 3 cut(s) 289, 326, 512
HpaII CCGG 2 cut(s) 30, 96
HphI GGTGA 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 3 cut(s) 121, 294, 684
Hpy188III TCNNGA 2 cut(s) 96, 156
Hpy8I GTNNAC 1 cut(s) 703
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 3 cut(s) 177, 530, 650
HpyCH4V TGCA 9 cut(s) 234, 393, 454, 467, 491, 544, 596, 663, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 423
Hsp92II CATG 3 cut(s) 206, 333, 377
Kpn2I TCCGGA 1 cut(s) 95
KpnI GGTACC 2 cut(s) 284, 356
Kzo9I GATC 2 cut(s) 367, 691
LmnI GCTCC 1 cut(s) 158
LweI GCATC 1 cut(s) 112
MabI ACCWGGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 128, 193
MalI GATC 2 cut(s) 369, 693
MbiI CCGCTC 1 cut(s) 422
MboI GATC 2 cut(s) 367, 691
MboII GAAGA 3 cut(s) 53, 226, 256
MfeI CAATTG 2 cut(s) 468, 591
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 3 cut(s) 85, 163, 705
MluCI AATT 6 cut(s) 217, 242, 455, 468, 565, 591
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 6 cut(s) 35, 64, 234, 279, 381, 690
MroI TCCGGA 1 cut(s) 95
MseI TTAA 3 cut(s) 461, 557, 579
MspI CCGG 2 cut(s) 30, 96
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 2 cut(s) 468, 591
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 2 cut(s) 367, 691
NlaIII CATG 3 cut(s) 206, 333, 377
NlaIV GGNNCC 4 cut(s) 100, 282, 354, 369
PfeI GAWTC 2 cut(s) 289, 326
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 4 cut(s) 100, 282, 354, 369
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 3 cut(s) 282, 312, 354
RsaNI GTAC 3 cut(s) 281, 311, 353
SaqAI TTAA 3 cut(s) 461, 557, 579
Sau3AI GATC 2 cut(s) 367, 691
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 3 cut(s) 85, 163, 705
SetI ASST 7 cut(s) 13, 94, 361, 399, 429, 446, 452
SexAI ACCWGGT 1 cut(s) 355
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 489
Sse9I AATT 6 cut(s) 217, 242, 455, 468, 565, 591
SsiI CCGC 2 cut(s) 365, 420
SspI AATATT 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 177, 530, 650
TaqII GACCGA 1 cut(s) 639
TasI AATT 6 cut(s) 217, 242, 455, 468, 565, 591
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 2 cut(s) 289, 326
Tru1I TTAA 3 cut(s) 461, 557, 579
Tru9I TTAA 3 cut(s) 461, 557, 579
TscAI CASTG 1 cut(s) 533
TspDTI ATGAA 3 cut(s) 53, 318, 496
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 701
XapI RAATTY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.