Rh7CG305000

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
31927671 .. 31931952
4282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG305000.1

Sequence Viewer

Length: 630 bp
ATGGCCTATGCAAGATTAGGCCAGTGGTTAAGTCTTCTGGTTTGTTTACTAATATTGCTTAAAGCTGAAAGCCATCCTGTGGAACTCACCTTGGTCCAGAGTGCAGTTGCCAAAGGAGCTGTTTGTTTAGACGGGAGCCCACCAGCATACCACTTTGACAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGGGAGGAGGATGGTGTAAGGATGTTGAGAGTTGTGTTGAGCGAACTAAAAACTTCAGAGGTTCATCCAAAAAAATGGAAAAGACAATATCTTTTTCTGGGGTTCTTGGTAAAAAGCAAACTATGAATCCAGACTTCTATAACTGGAACAGAATCAAGGTTAGGTACTGTGATGGGTCATCATTCACCGGTGATGTGGAAGCAGTAGACCCAGCTACAAATCTTCACTTCAGAGGAGGAAGGGTTTTTCATGCCATCATTGATGATCTATTAGCAAAGGGAATGATAAATGCCAAAAATGCTCTACTCTCTGGTTGTTCGGCTGGAGGATTGGCTTCTATTCTTCAATGTGATAACTTCCGTTCTCTCTTACCCGCCGGAACTAATGTGAAATGCCTTGCGGATGCTGGTTACTTCATCAATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

209

Amino Acids

22.58

Weight (kDa)

8.61

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 21 - 208 1e-97 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AccI GTMKAC 1 cut(s) 408
AciI CCGC 2 cut(s) 576, 602
AcuI CTGAAG 2 cut(s) 241, 415
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 1 cut(s) 548
AluBI AGCT 3 cut(s) 65, 119, 416
AluI AGCT 3 cut(s) 65, 119, 416
AoxI GGCC 2 cut(s) 3, 19
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AsiGI ACCGGT 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 79, 379, 404
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 26
BccI CCATC 4 cut(s) 81, 207, 368, 464
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 137
BmsI GCATC 1 cut(s) 595
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 22, 350
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 5 cut(s) 73, 218, 229, 266, 610
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 22, 350
BseRI GAGGAG 2 cut(s) 222, 450
BseYI CCCAGC 1 cut(s) 412
BsgI GTGCAG 2 cut(s) 123, 192
BshFI GGCC 2 cut(s) 5, 21
BshTI ACCGGT 1 cut(s) 389
BsiSI CCGG 2 cut(s) 390, 579
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 2 cut(s) 5, 21
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 466
BspACI CCGC 2 cut(s) 576, 602
BspANI GGCC 2 cut(s) 5, 21
BspLI GGNNCC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 2 cut(s) 22, 350
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 466
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 371
BstF5I GGATG 5 cut(s) 73, 218, 229, 266, 610
BstKTI GATC 1 cut(s) 469
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 2 cut(s) 116, 500
BstV2I GAAGAC 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 5, 21
BtsCI GGATG 5 cut(s) 73, 218, 229, 266, 610
BtsIMutI CAGTG 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 367
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 1 cut(s) 452
CviJI RGCY 9 cut(s) 5, 21, 65, 72, 119, 138, 416, 524, 536
CviKI_1 RGCY 9 cut(s) 5, 21, 65, 72, 119, 138, 416, 524, 536
CviQI GTAC 1 cut(s) 367
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 241, 415
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 455
FaiI YATR 6 cut(s) 9, 148, 198, 326, 342, 453
FatI CATG 1 cut(s) 451
FauI CCCGC 1 cut(s) 583
FblI GTMKAC 1 cut(s) 408
FokI GGATG 5 cut(s) 60, 225, 236, 253, 617
FriOI GRGCYC 1 cut(s) 140
GsaI CCCAGC 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 2 cut(s) 5, 21
HapII CCGG 2 cut(s) 390, 579
Hin1II CATG 1 cut(s) 455
HinfI GANTC 2 cut(s) 328, 354
HpaII CCGG 2 cut(s) 390, 579
HphI GGTGA 3 cut(s) 79, 379, 404
Hpy166II GTNNAC 2 cut(s) 47, 409
Hpy188I TCNGA 2 cut(s) 260, 434
Hpy188III TCNNGA 2 cut(s) 97, 332
Hpy8I GTNNAC 2 cut(s) 47, 409
HpyAV CCTTC 1 cut(s) 435
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 3 cut(s) 11, 104, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 500
Hsp92II CATG 1 cut(s) 455
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 2 cut(s) 116, 135
LweI GCATC 1 cut(s) 595
MaeIII GTNAC 1 cut(s) 611
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 3 cut(s) 26, 416, 536
MfeI CAATTG 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 1 cut(s) 184
MnlI CCTC 7 cut(s) 196, 200, 203, 254, 428, 431, 521
MseI TTAA 3 cut(s) 29, 60, 180
MspI CCGG 2 cut(s) 390, 579
MunI CAATTG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 116, 500
NdeII GATC 1 cut(s) 466
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 328, 354
PflMI CCANNNNNTGG 1 cut(s) 79
PinAI ACCGGT 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 3 cut(s) 29, 60, 180
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 140
SetI ASST 7 cut(s) 67, 92, 121, 265, 363, 368, 418
SfaNI GCATC 1 cut(s) 595
SgrAI CRCCGGYG 1 cut(s) 389
SinI GGWCC 1 cut(s) 94
Sse9I AATT 1 cut(s) 184
SsiI CCGC 2 cut(s) 576, 602
SspI AATATT 1 cut(s) 54
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 371
TasI AATT 1 cut(s) 184
TfiI GAWTC 2 cut(s) 328, 354
Tru1I TTAA 3 cut(s) 29, 60, 180
Tru9I TTAA 3 cut(s) 29, 60, 180
TscAI CASTG 1 cut(s) 29
TspDTI ATGAA 5 cut(s) 185, 255, 341, 440, 607
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.