Rh1AG149500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000996
Physical Location & Seq
Reverse (-)
28135462 .. 28139058
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG149500.1

Sequence Viewer

Length: 321 bp
ATGGCTATACTCTTCACGTCGTCCGCACTCAGCTCAAAAACTTTGACTGTCGTGACAGGCTTAACCATTCTGGTAGAGATTGGTATGTACTGTGCCATATGTGATAAAAATCATCTTATGGAGTCGCTGTCCCTCTTGAATAATGCAACTGTCCTCAGGAAAAAGCAACGGGAGTTCCTGTCGGAATCACTGTCCTTCAGACTGCGGTCCCCAAATGAGCCGTTTGTTTGGATGGGAGCTCCCCAGCTTACCATTGGGATATATAAGGGGTTTGGTTCAGGAGTTAACAATTGGTTAGTTCACATTGAGGGAGAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.69

Weight (kDa)

7.81

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 205
AcuI CTGAAG 1 cut(s) 181
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 18
AluBI AGCT 3 cut(s) 33, 239, 247
AluI AGCT 3 cut(s) 33, 239, 247
Alw21I GWGCWC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 207
AvaII GGWCC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 155
BanII GRGCYC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BccI CCATC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 209
BoxI GACNNNNGTC 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 108
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 164, 194
Bse21I CCTNAGG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 108
BseGI GGATG 1 cut(s) 237
BseJI GATNNNNATC 1 cut(s) 108
BseMII CTCAG 2 cut(s) 43, 169
BseYI CCCAGC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 241
BslFI GGGAC 2 cut(s) 115, 193
BsmFI GGGAC 2 cut(s) 115, 193
Bsp1286I GDGCHC 1 cut(s) 241
BspACI CCGC 2 cut(s) 24, 205
BspCNI CTCAG 2 cut(s) 42, 168
BspLI GGNNCC 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 49, 92, 151, 192
Bst6I CTCTTC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 29, 155
BstF5I GGATG 1 cut(s) 237
BstPAI GACNNNNGTC 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 155
BtrI CACGTC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 6 cut(s) 5, 33, 60, 220, 239, 247
CviKI_1 RGCY 6 cut(s) 5, 33, 60, 220, 239, 247
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 29, 155
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 241
FaiI YATR 7 cut(s) 8, 86, 98, 100, 119, 262, 264
FaqI GGGAC 2 cut(s) 115, 193
FauNDI CATATG 1 cut(s) 98
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 2 cut(s) 122, 185
HpaI GTTAAC 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 286, 301
Hpy188I TCNGA 2 cut(s) 184, 200
Hpy188III TCNNGA 4 cut(s) 52, 136, 157, 279
Hpy8I GTNNAC 2 cut(s) 286, 301
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 205, 308
HpyCH4III ACNGT 4 cut(s) 49, 92, 151, 192
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 29, 155
HpySE526I ACGT 1 cut(s) 17
KspAI GTTAAC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 236, 244
LpnPI CCDG 6 cut(s) 42, 56, 142, 191, 257, 264
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 1 cut(s) 4
MfeI CAATTG 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 1 cut(s) 289
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 3 cut(s) 143, 164, 301
MseI TTAA 2 cut(s) 62, 285
MunI CAATTG 1 cut(s) 289
NdeI CATATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 185
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PshAI GACNNNNGTC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 207
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 62, 285
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 241
SetI ASST 4 cut(s) 20, 35, 241, 249
SinI GGWCC 1 cut(s) 207
Sse9I AATT 1 cut(s) 289
SsiI CCGC 2 cut(s) 24, 205
SstI GAGCTC 1 cut(s) 241
TaaI ACNGT 4 cut(s) 49, 92, 151, 192
TaiI ACGT 1 cut(s) 20
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 62, 285
Tru9I TTAA 2 cut(s) 62, 285
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.