AT4G25170

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002211
Physical Location & Seq
Forward (+)
12909463 .. 12911580
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25170.1

Sequence Viewer

Length: 1035 bp
ATGTTTGGTGGAGGAAGAGGGCCTATGGGTGGCGGCGGAGGTATGTTACGCGCCGCCGGTCGTGCGATGACGAGGACCGGTGTAGCCAACGGTGGTATTCAAGATCCCTTTGCTTCTTCATCATCATCGTCCACGTCGTCTCCGGCTGGAAACGCCTCTGTTTCGCATGTCCAGAAACAGAGATCTTCTTCTTCTGGGTCGAATAATCTGACGTATTCCGCGGCTTCTGGGTTGTTGTTGAATCTTCCGGTGGCTGCAACCTCCGGATGGAGCGGCGGCGGTCCTTTTTCCTTTGTTAATTCTGGAGGTTATGATGATTTTGAGTGGGTTTCTGAGGAAGAAGATGATTCTCTGTTTGGCTCTGTTCCTTCTGTTGATGAAGTCCAAGATGCTGTTTCTGCTCTCCAGCAGGTTTTCGATGCTAGTTCATATTCCCAGCTGGTTAGAGACAAATACGAGTGCTATCCGGAAAATGGTGGTGGAAACCAGAGCCCTATAGCCACAGGGATGGTTCATCAAGTTCCTTCATTCGGGTCGGATTCGGACTGGATGGAGCCATCAATGCATTTATGCCATTCAAGAACGTTAAAGCCTCATGCTTATGATCAGGTTTACAATGCTTTTGACCTACTACGAACCGAACCATCTGTCCAGAAAATGGTAGTATCATTGTCGTCTGACAAAGCAGTTTGGGAGGCGGTGATGAACAACGATGTGGTGCGAGAGATTAGGGACTTGTACAACAATGGCATAAGTCAAGATGAGGAAAATTCAGAAGACACCCCTAGGGAGAATAACGCAGCAACGGATTTCATAAAGTGGGTATTTGACAACACAATGGTTAAGGCCACGGAAGTGTTTGTGAAAATAACAAAGGTCGTGACCGAGCTCTTCAATTGTTACAATGGTGATGGTGTTAACAACAAGGGGAAAGATGCCAAATTCAACAATTGGCTCGAGGAAAAGCTGACCACTTCGGTCCTGCTATCCATCATCGTTATGCTGGTCGTGATGGTATCCCGAGCCTGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

37.03

Weight (kDa)

4.68

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 658
AccBSI CCGCTC 1 cut(s) 273
AccII CGCG 2 cut(s) 51, 221
AccIII TCCGGA 2 cut(s) 263, 466
AciI CCGC 9 cut(s) 33, 36, 54, 219, 221, 273, 276, 279, 698
AclI AACGTT 1 cut(s) 584
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 769, 941
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 5 cut(s) 29, 267, 473, 530, 658
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 5 cut(s) 101, 241, 579, 895, 946
AjiI CACGTC 1 cut(s) 135
AleI CACNNNNGTG 1 cut(s) 854
AloI GAACNNNNNNTCC 2 cut(s) 633, 665
AluBI AGCT 3 cut(s) 439, 889, 967
AluI AGCT 3 cut(s) 439, 889, 967
Alw21I GWGCWC 1 cut(s) 891
Alw26I GTCTC 2 cut(s) 144, 441
AlwI GGATC 1 cut(s) 98
Ama87I CYCGRG 2 cut(s) 956, 1020
Aor13HI TCCGGA 2 cut(s) 263, 466
AoxI GGCC 2 cut(s) 20, 846
ApeKI GCWGC 2 cut(s) 254, 800
ApoI RAATTY 2 cut(s) 769, 941
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
AsiGI ACCGGT 1 cut(s) 77
AspA2I CCTAGG 1 cut(s) 785
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 4 cut(s) 20, 75, 281, 979
AsuHPI GGTGA 2 cut(s) 712, 920
AvaI CYCGRG 2 cut(s) 956, 1020
AvaII GGWCC 3 cut(s) 75, 281, 979
AvrII CCTAGG 1 cut(s) 785
BanII GRGCYC 2 cut(s) 494, 891
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 1 cut(s) 891
BbvI GCAGC 2 cut(s) 241, 812
BccI CCATC 8 cut(s) 261, 502, 544, 565, 652, 905, 998, 1006
BciVI GTATCC 1 cut(s) 1027
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 144, 441
BfaI CTAG 3 cut(s) 423, 786, 1033
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 400
BfuI GTATCC 1 cut(s) 1027
BglII AGATCT 1 cut(s) 182
BisI GCNGC 7 cut(s) 34, 54, 222, 255, 274, 277, 801
BlnI CCTAGG 1 cut(s) 785
BlsI GCNGC 7 cut(s) 35, 55, 223, 256, 275, 278, 802
Bme18I GGWCC 3 cut(s) 75, 281, 979
BmeT110I CYCGRG 2 cut(s) 956, 1020
BmgBI CACGTC 1 cut(s) 135
BmgT120I GGNCC 4 cut(s) 20, 75, 281, 979
BmiI GGNNCC 1 cut(s) 555
BmsI GCATC 3 cut(s) 379, 409, 925
BpiI GAAGAC 1 cut(s) 783
BpmI CTGGAG 2 cut(s) 324, 389
BsaJI CCNNGG 3 cut(s) 219, 785, 849
BsaWI WCCGGW 4 cut(s) 77, 247, 263, 466
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 267, 473, 530, 658
Bse118I RCCGGY 2 cut(s) 56, 77
Bse1I ACTGG 1 cut(s) 551
BseAI TCCGGA 2 cut(s) 263, 466
BseDI CCNNGG 3 cut(s) 219, 785, 849
BseGI GGATG 3 cut(s) 272, 513, 555
BseLI CCNNNNNNNGG 5 cut(s) 29, 267, 473, 530, 658
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 241, 812
BseYI CCCAGC 1 cut(s) 435
Bsh1236I CGCG 2 cut(s) 51, 221
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 22, 848
BshTI ACCGGT 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 891
BsiHKCI CYCGRG 2 cut(s) 956, 1020
BsiSI CCGG 6 cut(s) 57, 78, 143, 248, 264, 467
BslFI GGGAC 1 cut(s) 746
BslI CCNNNNNNNGG 5 cut(s) 29, 267, 473, 530, 658
BsmAI GTCTC 2 cut(s) 144, 441
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 746
BsnI GGCC 2 cut(s) 22, 848
BsoBI CYCGRG 2 cut(s) 956, 1020
Bsp1286I GDGCHC 2 cut(s) 494, 891
Bsp13I TCCGGA 2 cut(s) 263, 466
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 3 cut(s) 103, 182, 604
BspACI CCGC 9 cut(s) 33, 36, 54, 219, 221, 273, 276, 279, 698
BspANI GGCC 2 cut(s) 22, 848
BspCNI CTCAG 1 cut(s) 325
BspEI TCCGGA 2 cut(s) 263, 466
BspFNI CGCG 2 cut(s) 51, 221
BspLI GGNNCC 1 cut(s) 555
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 896
BsrBI CCGCTC 1 cut(s) 273
BsrFI RCCGGY 2 cut(s) 56, 77
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 1 cut(s) 551
BssAI RCCGGY 2 cut(s) 56, 77
BssECI CCNNGG 3 cut(s) 219, 785, 849
BssMI GATC 3 cut(s) 103, 182, 604
BssT1I CCWWGG 1 cut(s) 785
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 10, 896
BstAUI TGTACA 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 1027
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 2 cut(s) 219, 849
BstF5I GGATG 3 cut(s) 272, 513, 555
BstFNI CGCG 2 cut(s) 51, 221
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 106, 185, 607
BstMAI GTCTC 2 cut(s) 144, 441
BstMBI GATC 3 cut(s) 103, 182, 604
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 62, 152, 398, 562
BstNSI RCATGY 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 2 cut(s) 51, 221
BstV1I GCAGC 2 cut(s) 241, 812
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 2 cut(s) 103, 182
BstXI CCANNNNNNTGG 1 cut(s) 508
BstYI RGATCY 2 cut(s) 103, 182
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 2 cut(s) 22, 848
BtgI CCRYGG 2 cut(s) 219, 849
BtgZI GCGATG 1 cut(s) 80
BtrI CACGTC 1 cut(s) 135
BtsCI GGATG 3 cut(s) 272, 513, 555
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 1027
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 56, 77
Cfr13I GGNCC 4 cut(s) 20, 75, 281, 979
Cfr42I CCGCGG 1 cut(s) 222
Csp6I GTAC 1 cut(s) 739
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 2 cut(s) 167, 596
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 105, 184, 606
DpnII GATC 3 cut(s) 103, 182, 604
Eam1104I CTCTTC 2 cut(s) 10, 896
EarI CTCTTC 2 cut(s) 10, 896
EciI GGCGGA 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 889
Eco130I CCWWGG 1 cut(s) 785
Eco24I GRGCYC 2 cut(s) 494, 891
Eco47I GGWCC 3 cut(s) 75, 281, 979
Eco53kI GAGCTC 1 cut(s) 889
Eco88I CYCGRG 2 cut(s) 956, 1020
EcoICRI GAGCTC 1 cut(s) 889
EcoO109I RGGNCCY 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 785
EcoT22I ATGCAT 1 cut(s) 567
EcoT38I GRGCYC 2 cut(s) 494, 891
ErhI CCWWGG 1 cut(s) 785
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 170, 599
FaqI GGGAC 1 cut(s) 746
FatI CATG 2 cut(s) 166, 595
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 7 cut(s) 34, 54, 222, 255, 274, 277, 801
FokI GGATG 3 cut(s) 279, 520, 562
FriOI GRGCYC 2 cut(s) 494, 891
Fsp4HI GCNGC 7 cut(s) 34, 54, 222, 255, 274, 277, 801
FspBI CTAG 3 cut(s) 423, 786, 1033
GlaI GCGC 1 cut(s) 52
GluI GCNGC 7 cut(s) 34, 54, 222, 255, 274, 277, 801
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 2 cut(s) 324, 389
HaeIII GGCC 2 cut(s) 22, 848
HapII CCGG 6 cut(s) 57, 78, 143, 248, 264, 467
HhaI GCGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 170, 599
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HinfI GANTC 3 cut(s) 241, 347, 539
HpaI GTTAAC 1 cut(s) 919
HpaII CCGG 6 cut(s) 57, 78, 143, 248, 264, 467
HphI GGTGA 2 cut(s) 712, 920
Hpy166II GTNNAC 3 cut(s) 132, 613, 919
Hpy188I TCNGA 6 cut(s) 210, 334, 538, 544, 679, 775
Hpy8I GTNNAC 3 cut(s) 132, 613, 919
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 378, 534
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 3 cut(s) 134, 212, 584
HpyCH4V TGCA 3 cut(s) 257, 565, 1029
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 152, 398, 562
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 3 cut(s) 134, 212, 584
Hsp92II CATG 2 cut(s) 170, 599
HspAI GCGC 1 cut(s) 51
Kpn2I TCCGGA 2 cut(s) 263, 466
Ksp22I TGATCA 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 919
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 3 cut(s) 103, 182, 604
LguI GCTCTTC 1 cut(s) 896
LmnI GCTCC 2 cut(s) 270, 553
Lsp1109I GCAGC 2 cut(s) 241, 812
LweI GCATC 3 cut(s) 379, 409, 925
MaeI CTAG 3 cut(s) 423, 786, 1033
MaeII ACGT 3 cut(s) 134, 212, 584
MaeIII GTNAC 3 cut(s) 45, 880, 899
MalI GATC 3 cut(s) 105, 184, 606
MbiI CCGCTC 1 cut(s) 273
MboI GATC 3 cut(s) 103, 182, 604
MfeI CAATTG 2 cut(s) 895, 949
MflI RGATCY 2 cut(s) 103, 182
MhlI GDGCHC 2 cut(s) 494, 891
MluCI AATT 5 cut(s) 298, 769, 895, 941, 949
MmeI TCCRAC 1 cut(s) 516
Mph1103I ATGCAT 1 cut(s) 567
MroI TCCGGA 2 cut(s) 263, 466
MseI TTAA 4 cut(s) 297, 587, 843, 918
MslI CAYNNNNRTG 4 cut(s) 506, 600, 854, 998
MspA1I CMGCKG 2 cut(s) 221, 439
MspI CCGG 6 cut(s) 57, 78, 143, 248, 264, 467
MunI CAATTG 2 cut(s) 895, 949
MvnI CGCG 2 cut(s) 51, 221
MwoI GCNNNNNNNGC 4 cut(s) 62, 152, 398, 562
NdeII GATC 3 cut(s) 103, 182, 604
NlaIII CATG 2 cut(s) 170, 599
NlaIV GGNNCC 1 cut(s) 555
NmuCI GTSAC 1 cut(s) 880
NsiI ATGCAT 1 cut(s) 567
NspI RCATGY 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 854
PaeR7I CTCGAG 1 cut(s) 956
PciSI GCTCTTC 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 3 cut(s) 241, 347, 539
PflMI CCANNNNNTGG 1 cut(s) 658
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 7 cut(s) 35, 55, 223, 256, 275, 278, 802
Psp124BI GAGCTC 1 cut(s) 891
Psp1406I AACGTT 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 4 cut(s) 20, 75, 281, 979
PspXI VCTCGAGB 1 cut(s) 956
PsuI RGATCY 2 cut(s) 103, 182
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
RseI CAYNNNNRTG 4 cut(s) 506, 600, 854, 998
SacI GAGCTC 1 cut(s) 891
SacII CCGCGG 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 896
SaqAI TTAA 4 cut(s) 297, 587, 843, 918
SatI GCNGC 7 cut(s) 34, 54, 222, 255, 274, 277, 801
Sau3AI GATC 3 cut(s) 103, 182, 604
Sau96I GGNCC 4 cut(s) 20, 75, 281, 979
SduI GDGCHC 2 cut(s) 494, 891
SfaNI GCATC 3 cut(s) 379, 409, 925
SfcI CTRYAG 1 cut(s) 495
Sfr274I CTCGAG 1 cut(s) 956
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 3 cut(s) 75, 281, 979
SlaI CTCGAG 1 cut(s) 956
SmiMI CAYNNNNRTG 4 cut(s) 506, 600, 854, 998
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 5 cut(s) 298, 769, 895, 941, 949
SsiI CCGC 9 cut(s) 33, 36, 54, 219, 221, 273, 276, 279, 698
SspMI CTAG 3 cut(s) 423, 786, 1033
SstI GAGCTC 1 cut(s) 891
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 3 cut(s) 137, 215, 587
TaqI TCGA 3 cut(s) 200, 417, 957
TaqII GACCGA 2 cut(s) 899, 967
TasI AATT 5 cut(s) 298, 769, 895, 941, 949
TatI WGTACW 1 cut(s) 738
TauI GCSGC 5 cut(s) 36, 56, 224, 276, 279
TfiI GAWTC 3 cut(s) 241, 347, 539
Tru1I TTAA 4 cut(s) 297, 587, 843, 918
Tru9I TTAA 4 cut(s) 297, 587, 843, 918
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 2 cut(s) 254, 800
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 7 cut(s) 108, 393, 417, 503, 516, 719, 802
TspGWI ACGGA 2 cut(s) 821, 866
Van91I CCANNNNNTGG 1 cut(s) 658
VpaK11BI GGWCC 3 cut(s) 75, 281, 979
XapI RAATTY 2 cut(s) 769, 941
XceI RCATGY 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 956
XmaJI CCTAGG 1 cut(s) 785
XspI CTAG 3 cut(s) 423, 786, 1033
Zsp2I ATGCAT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.