Rw1G034430

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002211
Physical Location & Seq
Forward (+)
62332756 .. 62335902
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034430.1

Sequence Viewer

Length: 1074 bp
ATGATGTTCGGCGGCAGAAGCATGGGCGGCGGAGGAAGTATGTTCCGTTCAGTCAGCAGGGCGGCGCTGACTAGAACTACCGGTGTTGCAATCCAAGAACCCATCACTTCTTCGAGTTCTAACACCAGCACAACCACCACCACGACTGCTACTAGTCCTTCGGCTTCTAGGAATACCCAGAAACCCGGTTCGGTTAGTAACCTCTGTCTCTCTTCTCCTACCTCTCCGAATTGTGGGCCCGTTTCTGCGAGTTCCGACGGGCACAACTGGCCCACTTCGCCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCACTCCTACTCATCATCCCCAGTTCATCCGGGATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCCGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTCTGCTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATGGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAATCCTTCTATGCAGCTGAAGACAATAGTTCCCAGAGTCCATCTGAGGATTCTGATGATAACAGTACAGCAACAAACTTTTTGAGGTGGATCTTTCAAAATACCTATGGAAAGGTAATGGAGGTAATAGAGAGCATTACCAAGCTTTTTGATCATTTGCTTCAACCTCAAGGCAGTGGCAAGGCGAAAGCTGAAGCTGGTAATCTGTTTGAGGAGAGGCTGAGAACATCAGTCATGCTCTCTGTCGTGGTCCTCTTGGTTGTGGTGGTTACTCGAACCCACAGCTTAGAACAGTGGGAACTAGGAACTATTTGGCTATTTGCAGTTATGCACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

38.9

Weight (kDa)

4.76

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 12, 27, 30, 62
AclWI GGATC 2 cut(s) 491, 833
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 2 cut(s) 774, 948
AfaI GTAC 2 cut(s) 476, 802
AfiI CCNNNNNNNGG 2 cut(s) 233, 598
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 3 cut(s) 416, 833, 899
AhlI ACTAGT 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
AluBI AGCT 8 cut(s) 338, 494, 730, 752, 880, 926, 932, 1020
AluI AGCT 8 cut(s) 338, 494, 730, 752, 880, 926, 932, 1020
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 491, 833
AoxI GGCC 2 cut(s) 236, 269
ApaI GGGCCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 526, 749
ApoI RAATTY 1 cut(s) 461
AsiGI ACCGGT 1 cut(s) 80
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 5 cut(s) 236, 237, 270, 368, 985
AsuC2I CCSGG 2 cut(s) 186, 455
AsuHPI GGTGA 1 cut(s) 733
AvaII GGWCC 2 cut(s) 368, 985
AxyI CCTNAGG 1 cut(s) 597
BaeGI GKGCMC 2 cut(s) 240, 264
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 762
BbvCI CCTCAGC 1 cut(s) 731
BbvI GCAGC 2 cut(s) 538, 761
BccI CCATC 3 cut(s) 110, 556, 784
BclI TGATCA 1 cut(s) 886
BcnI CCSGG 2 cut(s) 186, 455
BcoDI GTCTC 1 cut(s) 212
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 4 cut(s) 72, 153, 168, 1037
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 5 cut(s) 13, 28, 63, 527, 750
BlsI GCNGC 5 cut(s) 14, 29, 64, 528, 751
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 2 cut(s) 186, 455
Bme18I GGWCC 2 cut(s) 368, 985
BmgT120I GGNCC 5 cut(s) 236, 237, 270, 368, 985
BmiI GGNNCC 3 cut(s) 238, 469, 567
BmrFI CCNGG 2 cut(s) 186, 455
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 688
BmuI ACTGGG 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 888
BpuMI CCSGG 2 cut(s) 186, 455
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 598
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 272, 445
Bse21I CCTNAGG 1 cut(s) 597
BseGI GGATG 6 cut(s) 439, 450, 493, 567, 608, 703
BseLI CCNNNNNNNGG 2 cut(s) 233, 598
BseMII CTCAG 5 cut(s) 296, 611, 722, 771, 947
BseNI ACTGG 2 cut(s) 272, 445
BseRI GAGGAG 1 cut(s) 962
BseSI GKGCMC 2 cut(s) 240, 264
BseXI GCAGC 2 cut(s) 538, 761
BseYI CCCAGC 1 cut(s) 591
BsgI GTGCAG 1 cut(s) 545
BshFI GGCC 2 cut(s) 238, 271
BshTI ACCGGT 1 cut(s) 80
BsiSI CCGG 3 cut(s) 81, 186, 454
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 2 cut(s) 233, 598
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 559
BsnI GGCC 2 cut(s) 238, 271
Bsp120I GGGCCC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 240, 264
Bsp143I GATC 3 cut(s) 496, 825, 886
BspACI CCGC 4 cut(s) 12, 27, 30, 62
BspANI GGCC 2 cut(s) 238, 271
BspCNI CTCAG 5 cut(s) 295, 610, 723, 772, 948
BspLI GGNNCC 3 cut(s) 238, 469, 567
BspPI GGATC 2 cut(s) 491, 833
BspQI GCTCTTC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 272, 445
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 3 cut(s) 496, 825, 886
Bst4CI ACNGT 2 cut(s) 800, 1029
Bst6I CTCTTC 2 cut(s) 217, 417
BstDEI CTNAG 6 cut(s) 282, 597, 731, 780, 956, 1021
BstF5I GGATG 6 cut(s) 439, 450, 493, 567, 608, 703
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 499, 828, 889
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 3 cut(s) 496, 825, 886
BstMWI GCNNNNNNNGC 5 cut(s) 18, 27, 268, 277, 407
BstSCI CCNGG 2 cut(s) 184, 453
BstSLI GKGCMC 2 cut(s) 240, 264
BstV1I GCAGC 2 cut(s) 538, 761
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
Bsu36I CCTNAGG 1 cut(s) 597
BsuRI GGCC 2 cut(s) 238, 271
BtsCI GGATG 6 cut(s) 439, 450, 493, 567, 608, 703
BtsI GCAGTG 1 cut(s) 916
BtsIMutI CAGTG 2 cut(s) 916, 1034
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 5 cut(s) 236, 237, 270, 368, 985
Csp6I GTAC 2 cut(s) 475, 801
CspAI ACCGGT 1 cut(s) 80
CviAII CATG 3 cut(s) 22, 341, 970
CviQI GTAC 2 cut(s) 475, 801
DdeI CTNAG 6 cut(s) 282, 597, 731, 780, 956, 1021
DpnI GATC 3 cut(s) 498, 827, 888
DpnII GATC 3 cut(s) 496, 825, 886
Eam1104I CTCTTC 2 cut(s) 217, 417
EarI CTCTTC 2 cut(s) 217, 417
EciI GGCGGA 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 368, 985
Eco57I CTGAAG 2 cut(s) 774, 948
Eco81I CCTNAGG 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 3 cut(s) 25, 344, 973
FaiI YATR 9 cut(s) 23, 41, 342, 618, 747, 843, 971, 1064, 1072
FaqI GGGAC 1 cut(s) 559
FatI CATG 3 cut(s) 21, 340, 969
FbaI TGATCA 1 cut(s) 886
Fnu4HI GCNGC 5 cut(s) 13, 28, 63, 527, 750
FokI GGATG 6 cut(s) 426, 437, 500, 574, 615, 710
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 5 cut(s) 13, 28, 63, 527, 750
FspBI CTAG 4 cut(s) 72, 153, 168, 1037
GlaI GCGC 1 cut(s) 66
GluI GCNGC 5 cut(s) 13, 28, 63, 527, 750
GsaI CCCAGC 1 cut(s) 595
GsuI CTGGAG 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 2 cut(s) 238, 271
HapII CCGG 3 cut(s) 81, 186, 454
HhaI GCGC 1 cut(s) 67
Hin1II CATG 3 cut(s) 25, 344, 973
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 5 cut(s) 551, 644, 737, 772, 785
HpaII CCGG 3 cut(s) 81, 186, 454
HphI GGTGA 1 cut(s) 733
Hpy166II GTNNAC 3 cut(s) 313, 394, 426
Hpy188I TCNGA 9 cut(s) 228, 256, 472, 501, 556, 657, 682, 781, 790
Hpy188III TCNNGA 2 cut(s) 350, 381
Hpy8I GTNNAC 3 cut(s) 313, 394, 426
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 168, 387, 579, 751
HpyCH4III ACNGT 2 cut(s) 800, 1029
HpyCH4V TGCA 6 cut(s) 89, 526, 637, 749, 1058, 1066
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 27, 268, 277, 407
HpyF3I CTNAG 6 cut(s) 282, 597, 731, 780, 956, 1021
Hsp92II CATG 3 cut(s) 25, 344, 973
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 886
Kzo9I GATC 3 cut(s) 496, 825, 886
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 2 cut(s) 565, 727
Lsp1109I GCAGC 2 cut(s) 538, 761
LweI GCATC 1 cut(s) 688
MaeI CTAG 4 cut(s) 72, 153, 168, 1037
MaeIII GTNAC 2 cut(s) 197, 1003
MalI GATC 3 cut(s) 498, 827, 888
MboI GATC 3 cut(s) 496, 825, 886
MboII GAAGA 6 cut(s) 102, 204, 335, 404, 528, 767
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 2 cut(s) 240, 264
MluCI AATT 3 cut(s) 229, 461, 586
MlyI GAGTC 2 cut(s) 653, 781
MmeI TCCRAC 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 3 cut(s) 81, 186, 454
MspR9I CCNGG 2 cut(s) 186, 455
MwoI GCNNNNNNNGC 5 cut(s) 18, 27, 268, 277, 407
NciI CCSGG 2 cut(s) 186, 455
NdeII GATC 3 cut(s) 496, 825, 886
NlaIII CATG 3 cut(s) 25, 344, 973
NlaIV GGNNCC 3 cut(s) 238, 469, 567
PciSI GCTCTTC 1 cut(s) 417
PfeI GAWTC 3 cut(s) 551, 737, 785
PfoI TCCNGGA 1 cut(s) 453
PinAI ACCGGT 1 cut(s) 80
PkrI GCNGC 5 cut(s) 14, 29, 64, 528, 751
PleI GAGTC 2 cut(s) 652, 780
PpsI GAGTC 2 cut(s) 652, 780
PspFI CCCAGC 1 cut(s) 591
PspN4I GGNNCC 3 cut(s) 238, 469, 567
PspOMI GGGCCC 1 cut(s) 236
PspPI GGNCC 5 cut(s) 236, 237, 270, 368, 985
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PsuI RGATCY 1 cut(s) 825
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 2 cut(s) 476, 802
RsaNI GTAC 2 cut(s) 475, 801
SapI GCTCTTC 1 cut(s) 417
SatI GCNGC 5 cut(s) 13, 28, 63, 527, 750
Sau3AI GATC 3 cut(s) 496, 825, 886
Sau96I GGNCC 5 cut(s) 236, 237, 270, 368, 985
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 2 cut(s) 653, 781
ScrFI CCNGG 2 cut(s) 186, 455
SduI GDGCHC 2 cut(s) 240, 264
SfaNI GCATC 1 cut(s) 688
SinI GGWCC 2 cut(s) 368, 985
SmlI CTYRAG 1 cut(s) 903
SmoI CTYRAG 1 cut(s) 903
SpeI ACTAGT 1 cut(s) 152
Sse9I AATT 3 cut(s) 229, 461, 586
SsiI CCGC 4 cut(s) 12, 27, 30, 62
SspMI CTAG 4 cut(s) 72, 153, 168, 1037
StyD4I CCNGG 2 cut(s) 184, 453
TaaI ACNGT 2 cut(s) 800, 1029
TaqI TCGA 3 cut(s) 113, 297, 1009
TasI AATT 3 cut(s) 229, 461, 586
TatI WGTACW 2 cut(s) 474, 800
TauI GCSGC 3 cut(s) 15, 30, 65
TfiI GAWTC 3 cut(s) 551, 737, 785
TscAI CASTG 2 cut(s) 916, 1034
TseI GCWGC 2 cut(s) 526, 749
TspDTI ATGAA 5 cut(s) 402, 439, 528, 660, 722
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 916, 1034
VpaK11BI GGWCC 2 cut(s) 368, 985
XapI RAATTY 1 cut(s) 461
XspI CTAG 4 cut(s) 72, 153, 168, 1037
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.