Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

45800380 .. 45803645

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAATTCTTGCTTTGGGACTGTTTGTTTCATCTTTTGGGAAATTGGGTTTGGGTTCGCGTTCGTCAATTTTGAAACTTTGTTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACTTGTTCCTACTGGAGATGAAGTTCACAACGCTTTTATCTGTTATAAATTTGGTTCCGAGCACTTGGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCAATTGGGATGGAATCAGATTGGATGGAGCCTTATGTTTACCTTTTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATAGTGGTTTCATTGTCATCTGATAGACCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAAAACCTTCTATGCAGACTTGATAATATCGGAGAGTTTACATCGAAGTCTTTTGATGATTATTGCATATCCCTTGGGATTGATGCTGAACATATAGTTCCCTATGTTCACACCGAAGATGGTCTCGTAAATAGAATCTTGGTAATGCGCACCAAGCTTCTAATTTCTGCATGGGGCTGTGCAATATTGCATGCAACTATGTTGGTCCTGTTGAGGCCCACTGCTACCAACCTTACTCCGCGTTACAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.57

Weight (kDa)

4.61

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
Acc16I	TGCGCA	1 cut(s)	608
AccII	CGCG	2 cut(s)	61, 700
AciI	CCGC	1 cut(s)	698
AcsI	RAATTY	2 cut(s)	6, 215
AgsI	TTSAA	2 cut(s)	76, 294
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	5 cut(s)	137, 248, 454, 616, 708
AluI	AGCT	5 cut(s)	137, 248, 454, 616, 708
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	587
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	6, 215
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	2 cut(s)	664, 675
AsuHPI	GGTGA	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	664
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	3 cut(s)	295, 310, 572
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	587
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	664, 675
BmiI	GGNNCC	2 cut(s)	223, 321
BmsI	GCATC	2 cut(s)	412, 532
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	532
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	2 cut(s)	184, 413
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	4 cut(s)	247, 306, 321, 427
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	184, 413
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	2 cut(s)	61, 700
BshFI	GGCC	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	676
Bso31I	GGTCTC	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	1 cut(s)	447
BspFNI	CGCG	2 cut(s)	61, 700
BspLI	GGNNCC	2 cut(s)	223, 321
BspTNI	GGTCTC	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	184, 413
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	532
Bst4CI	ACNGT	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	4 cut(s)	247, 306, 321, 427
BstFNI	CGCG	2 cut(s)	61, 700
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNSI	RCATGY	1 cut(s)	653
BstUI	CGCG	2 cut(s)	61, 700
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	676
BtsCI	GGATG	4 cut(s)	247, 306, 321, 427
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	1 cut(s)	651
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	2 cut(s)	664, 675
CviAII	CATG	3 cut(s)	140, 630, 650
CviJI	RGCY	9 cut(s)	137, 248, 322, 347, 454, 616, 636, 676, 708
CviKI_1	RGCY	9 cut(s)	137, 248, 322, 347, 454, 616, 636, 676, 708
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	3 cut(s)	143, 633, 653
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	139, 629, 649
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	4 cut(s)	254, 313, 328, 434
Fsp4HI	GCNGC	1 cut(s)	281
FspAI	RTGCGCAY	1 cut(s)	608
FspI	TGCGCA	1 cut(s)	608
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	676
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	3 cut(s)	143, 633, 653
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	3 cut(s)	305, 368, 594
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	5 cut(s)	112, 193, 331, 498, 568
Hpy188I	TCNGA	6 cut(s)	226, 255, 310, 381, 406, 491
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	5 cut(s)	112, 193, 331, 498, 568
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	8 cut(s)	280, 361, 474, 525, 629, 641, 649, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpyF3I	CTNAG	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	143, 633, 653
HspAI	GCGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	319, 451
LpnPI	CCDG	5 cut(s)	165, 255, 426, 680, 694
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	412, 532
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	134, 282, 587
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	6 cut(s)	6, 44, 69, 215, 294, 621
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	5 cut(s)	337, 433, 441, 450, 666
MroXI	GAANNNNTTC	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	708
MunI	CAATTG	1 cut(s)	294
MvnI	CGCG	2 cut(s)	61, 700
MwoI	GCNNNNNNNGC	1 cut(s)	613
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	143, 633, 653
NlaIV	GGNNCC	2 cut(s)	223, 321
NsbI	TGCGCA	1 cut(s)	608
NspI	RCATGY	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	305, 594
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	223, 321
PspPI	GGNCC	2 cut(s)	664, 675
PvuII	CAGCTG	1 cut(s)	708
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	664, 675
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	139, 250, 336, 444, 456, 468, 618, 693, 710
SfaNI	GCATC	2 cut(s)	412, 532
SinI	GGWCC	1 cut(s)	664
SphI	GCATGC	1 cut(s)	653
Sse9I	AATT	6 cut(s)	6, 44, 69, 215, 294, 621
SsiI	CCGC	1 cut(s)	698
SspI	AATATT	1 cut(s)	645
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	96, 503
TasI	AATT	6 cut(s)	6, 44, 69, 215, 294, 621
TfiI	GAWTC	2 cut(s)	305, 594
TscAI	CASTG	1 cut(s)	685
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	21, 201, 384, 446
TspRI	CASTG	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	2 cut(s)	6, 215
XceI	RCATGY	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.