Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Forward (+)

32804923 .. 32806319

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAATTCTTGGCTTTGGGACTCCCACTTCACCTCAGTTTGATGATTTCAATTGGGTTTTTGTGGATGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCAGTCCAACTCATCACCCCCAGTTTATCTGTTATAAATTTGGTTCCGAGTACTTAGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTAGGACAGAATCAGATTGGATGGAGCCTTCTGTTTACCTTTGTAATTCCCAGCCTCAGGGACGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATTTGTTCAGAGAATAGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTAAAGGAATCCTTCTATGTAGGTTGGTATGAATTTCAAGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.96

Weight (kDa)

4.39

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AatII	GACGTC	1 cut(s)	361
AcsI	RAATTY	3 cut(s)	6, 215, 515
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	52, 170, 521
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	3 cut(s)	92, 248, 484
AluI	AGCT	3 cut(s)	92, 248, 484
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	3 cut(s)	6, 215, 515
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	24, 185, 487
AvaII	GGWCC	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	62, 310
BclI	TGATCA	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	527
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmcAI	AGTACT	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	223, 321
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	351
BseGI	GGATG	4 cut(s)	73, 247, 321, 457
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	50, 365
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	34, 369
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	34, 369
Bsp143I	GATC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	49, 364
BspLI	GGNNCC	2 cut(s)	223, 321
BspQI	GCTCTTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	36, 232, 351
BstF5I	GGATG	4 cut(s)	73, 247, 321, 457
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	527
BstV1I	GCAGC	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	351
BtsCI	GGATG	4 cut(s)	73, 247, 321, 457
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	7 cut(s)	15, 92, 248, 322, 349, 377, 484
CviKI_1	RGCY	7 cut(s)	15, 92, 248, 322, 349, 377, 484
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	36, 232, 351
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	98
FaiI	YATR	6 cut(s)	96, 213, 372, 501, 513, 529
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	2 cut(s)	34, 369
FatI	CATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	4 cut(s)	80, 254, 328, 464
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	4 cut(s)	22, 305, 398, 491
HphI	GGTGA	3 cut(s)	24, 185, 487
Hpy166II	GTNNAC	2 cut(s)	148, 331
Hpy188I	TCNGA	5 cut(s)	226, 255, 310, 411, 436
Hpy188III	TCNNGA	2 cut(s)	104, 135
Hpy8I	GTNNAC	2 cut(s)	148, 331
HpyAV	CCTTC	3 cut(s)	141, 333, 505
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	280, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	36, 232, 351
HpySE526I	ACGT	1 cut(s)	358
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	319, 481
LpnPI	CCDG	7 cut(s)	120, 138, 158, 212, 255, 338, 359
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	358
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	89, 158, 282
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	5 cut(s)	6, 52, 215, 340, 515
MlyI	GAGTC	2 cut(s)	16, 407
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	45, 360, 367, 463, 471
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	223, 321
PciSI	GCTCTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	305, 491
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	2 cut(s)	16, 406
PpsI	GAGTC	2 cut(s)	16, 406
PsiI	TTATAA	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	223, 321
PspPI	GGNCC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	171
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	122
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	2 cut(s)	16, 407
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	5 cut(s)	6, 52, 215, 340, 515
TaiI	ACGT	1 cut(s)	361
TasI	AATT	5 cut(s)	6, 52, 215, 340, 515
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	305, 491
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	156, 282, 414, 476, 528
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	3 cut(s)	6, 215, 515
ZraI	GACGTC	1 cut(s)	359
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.