Rorug04G0028500

conserved protein UCP012943

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
3993644 .. 3995739
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0028500.1

Sequence Viewer

Length: 1590 bp
ATGGCCAAACTAAGAAACACTGTCTTCCTCTATTTCTCATGTTTCTGCATGCGTTATTTTTCTTCTTCTCATGCACAAACCCAAAATGCTACACTCAAGCAAGGCCAACAGCTACACGACCAGGGTGGTGATTATCTTGTTTCCGAAAATGGTTTGTTCAAGTTAGGCTTCTTCAGTCCTGGCAACTCAAGCATTTTCGGTGCTACAAGTAATCGTTACTTAGGAATATGGTACTACAAACTACCAAATGATCTAGATGCAGTATGGGTAGCCAATCCAGAAACTCCGATCATAGATACATCAGGAGTATTTGCATTGGCTAGTGATGCAACATCGAAGCTCATTCATGGTGGAGGCCAAATATCTGTCTCAGATCCCAATCAAACAGTTTCTGGTAATGTGACTGTCTCCTTATTAGATACTGGAAATTTGGTCTTGAGAGAAGTAACTTCTAATGGAACACTTGGAGAAGTTTTGTGGGAAAGCTTTGACCATCCAACCAACACATTGTTACCTGGAATGAAATTGGGCATCAATGTCGAGGCTGGACAGAATTGGACTATTTCTTCCTGGTTCAGTGATCAAATCCCTGCACCAGGTGTTTTTAGGCTTGGCGTTGATCCTGGTAGCACCAACCAATTGATCATCTGGAGGCGAGATGAAGTATACTGGAGCAGTGGGGTCTGGGAAAATGGAACCTTTCAAAATGCTCCTGAAATGACTAGGGTTGATCTATTTGAGTTCACTTTTGTTTCAAACAAGGAAGATAAGTACTTTACTTATACCGTTAAAAACAGGTCTACTATTTCAAGGTGGGAACTGAATGCTTGGGGCCAAATCATGCAGTCCACTTTAACTCTCAATGGTACTACTTATTGGGAGAGCACAGAAGCTAGTCCATGCACATTCAACTTGACTAATCCGGGAGCCCTGTGCATAGAGGAGAAGCCCTCTGAATGCAGGAATGGCTCGGACGGACTTGTACCAGTAAGAGGCTATTTTGATGGAAACGAAATTTTACATCATGACAACAATACTAAAATGACTGTTAGTGATTGCCATGCTACTTGCTGGAGTGACTGCACCTGTACTGGCTACAAAAGTATATATACCAATGGGACTGGGTGTGTATTTATGAGTGGAGAAGCGAAATTTATCCCGAATAGTTACTTTGATGCTACTTATGTCCTTGAGATATGGAATCATAGCAAAGAGGAGGTAGGCTGTATGAAAGGAAAACAGAGGAGAGGTTTGTATGATGCAGAACAGATGGCAGCCCAATTTGAAGAACAGTTGGATCGTGCTAAAGGAGGAAAACGAAAAGTGACTAGTAGACGCGAAACAGCTCCTCGGAGTCCGATTGGGACGCACCTTACCTTTCCGGAAAGGGAATCGCGCCAGAAATCAAACTCGTCGCTATGCCACGACCTGTGGCCTTTTTCGGGCTTTCGGGGTCGTTTAGGGCCTCAAAACTGCATTTTTCTATTTTCCGGTGTTTTGGTTTTCCTAGTTATTTTCGGGTTGTTTTCGTTTTTACCCATGGGCTTTAGGGTTTCATTGTTAGTCGCCCTAGGGTTTATTTTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

529

Amino Acids

59.08

Weight (kDa)

5.86

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 191 1.9e-25 D-mannose binding lectin
S_locus_glycop PF00954 224 - 321 1.6e-09 S-locus glycoprotein domain
PAN_2 PF08276 320 - 381 2e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1588
AccI GTMKAC 3 cut(s) 666, 800, 1333
AccII CGCG 2 cut(s) 1338, 1396
AccIII TCCGGA 1 cut(s) 1381
AclWI GGATC 3 cut(s) 368, 614, 1305
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 427, 1014, 1151
AcuI CTGAAG 1 cut(s) 157
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 5 cut(s) 233, 773, 868, 984, 1090
AfiI CCNNNNNNNGG 3 cut(s) 596, 992, 1442
AgsI TTSAA 6 cut(s) 160, 704, 756, 810, 910, 1286
AhlI ACTAGT 1 cut(s) 1328
AjnI CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
AluBI AGCT 5 cut(s) 112, 340, 486, 893, 1346
AluI AGCT 5 cut(s) 112, 340, 486, 893, 1346
Alw21I GWGCWC 1 cut(s) 887
Alw26I GTCTC 2 cut(s) 373, 412
AlwI GGATC 3 cut(s) 368, 614, 1305
AlwNI CAGNNNCTG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 1381
AoxI GGCC 6 cut(s) 3, 103, 355, 832, 1433, 1463
ApeKI GCWGC 1 cut(s) 1274
ApoI RAATTY 3 cut(s) 427, 1014, 1151
AspA2I CCTAGG 1 cut(s) 1570
AspLEI GCGC 1 cut(s) 1398
AspS9I GGNCC 2 cut(s) 832, 1463
AsuC2I CCSGG 1 cut(s) 924
AsuHPI GGTGA 1 cut(s) 140
AvrII CCTAGG 1 cut(s) 1570
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 931
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 887
BbvI GCAGC 1 cut(s) 1286
BccI CCATC 3 cut(s) 501, 998, 1264
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
BclI TGATCA 2 cut(s) 580, 642
BcnI CCSGG 1 cut(s) 924
BcoDI GTCTC 2 cut(s) 373, 412
BcuI ACTAGT 1 cut(s) 1328
BfaI CTAG 7 cut(s) 254, 321, 723, 894, 1329, 1508, 1571
BisI GCNGC 1 cut(s) 1275
BlnI CCTAGG 1 cut(s) 1570
BlsI GCNGC 1 cut(s) 1276
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
BmgT120I GGNCC 2 cut(s) 832, 1463
BmiI GGNNCC 3 cut(s) 697, 833, 928
BmrFI CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
BmrI ACTGGG 1 cut(s) 1131
BmsI GCATC 5 cut(s) 247, 316, 540, 1165, 1249
BmuI ACTGGG 1 cut(s) 1131
BpiI GAAGAC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 935, 967
BpmI CTGGAG 3 cut(s) 670, 691, 1093
BpuEI CTTGAG 4 cut(s) 80, 172, 457, 1211
BpuMI CCSGG 1 cut(s) 924
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 4 cut(s) 121, 1349, 1539, 1570
BsaWI WCCGGW 2 cut(s) 1381, 1490
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 992, 1442
Bse1I ACTGG 5 cut(s) 427, 674, 986, 1096, 1126
Bse8I GATNNNNATC 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 1381
BseBI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
BseDI CCNNGG 4 cut(s) 121, 1349, 1539, 1570
BseGI GGATG 1 cut(s) 493
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 3 cut(s) 596, 992, 1442
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 5 cut(s) 427, 674, 986, 1096, 1126
BseRI GAGGAG 4 cut(s) 956, 1229, 1258, 1338
BseXI GCAGC 1 cut(s) 1286
BsgI GTGCAG 2 cut(s) 576, 1066
Bsh1236I CGCG 2 cut(s) 1338, 1396
BshFI GGCC 6 cut(s) 5, 105, 357, 834, 1435, 1465
BsiHKAI GWGCWC 1 cut(s) 887
BsiSI CCGG 3 cut(s) 923, 1382, 1491
BslFI GGGAC 2 cut(s) 1132, 1378
BslI CCNNNNNNNGG 3 cut(s) 596, 992, 1442
BsmAI GTCTC 2 cut(s) 373, 412
BsmFI GGGAC 2 cut(s) 1132, 1378
BsmI GAATGC 2 cut(s) 829, 962
BsnI GGCC 6 cut(s) 5, 105, 357, 834, 1435, 1465
Bsp1286I GDGCHC 2 cut(s) 887, 931
Bsp13I TCCGGA 1 cut(s) 1381
Bsp143I GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
Bsp19I CCATGG 1 cut(s) 1539
BspANI GGCC 6 cut(s) 5, 105, 357, 834, 1435, 1465
BspCNI CTCAG 1 cut(s) 383
BspEI TCCGGA 1 cut(s) 1381
BspFNI CGCG 2 cut(s) 1338, 1396
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 3 cut(s) 697, 833, 928
BspPI GGATC 3 cut(s) 368, 614, 1305
BsrI ACTGG 5 cut(s) 427, 674, 986, 1096, 1126
BssECI CCNNGG 4 cut(s) 121, 1349, 1539, 1570
BssMI GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
BssNAI GTATAC 1 cut(s) 667
BssT1I CCWWGG 2 cut(s) 1539, 1570
Bst1107I GTATAC 1 cut(s) 667
Bst2UI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
Bst4CI ACNGT 6 cut(s) 22, 388, 406, 787, 1048, 1293
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 11, 220, 370
BstDSI CCRYGG 1 cut(s) 1539
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 2 cut(s) 1338, 1396
BstHHI GCGC 1 cut(s) 1398
BstKTI GATC 8 cut(s) 253, 291, 376, 583, 622, 645, 733, 1300
BstMAI GTCTC 2 cut(s) 373, 412
BstMBI GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
BstMWI GCNNNNNNNGC 3 cut(s) 189, 326, 966
BstNI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 7 cut(s) 120, 178, 514, 569, 595, 622, 922
BstUI CGCG 2 cut(s) 1338, 1396
BstV1I GCAGC 1 cut(s) 1286
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BstZ17I GTATAC 1 cut(s) 667
BsuRI GGCC 6 cut(s) 5, 105, 357, 834, 1435, 1465
BtgI CCRYGG 1 cut(s) 1539
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 3 cut(s) 18, 583, 682
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 1 cut(s) 1398
Cfr13I GGNCC 2 cut(s) 832, 1463
CseI GACGC 2 cut(s) 1344, 1375
CsiI ACCWGGT 1 cut(s) 595
Csp6I GTAC 5 cut(s) 232, 772, 867, 983, 1089
CviAII CATG 9 cut(s) 39, 49, 71, 347, 841, 900, 1025, 1061, 1540
CviQI GTAC 5 cut(s) 232, 772, 867, 983, 1089
DdeI CTNAG 3 cut(s) 11, 220, 370
DpnI GATC 8 cut(s) 252, 290, 375, 582, 621, 644, 732, 1299
DpnII GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
DraIII CACNNNGTG 1 cut(s) 599
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 1539, 1570
Eco24I GRGCYC 1 cut(s) 931
Eco57I CTGAAG 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 1463
EcoRII CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
EcoT14I CCWWGG 2 cut(s) 1539, 1570
EcoT38I GRGCYC 1 cut(s) 931
ErhI CCWWGG 2 cut(s) 1539, 1570
FaeI CATG 9 cut(s) 42, 52, 74, 350, 844, 903, 1028, 1064, 1543
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 1132, 1378
FatI CATG 9 cut(s) 38, 48, 70, 346, 840, 899, 1024, 1060, 1539
FbaI TGATCA 2 cut(s) 580, 642
FblI GTMKAC 3 cut(s) 666, 800, 1333
Fnu4HI GCNGC 1 cut(s) 1275
FokI GGATG 1 cut(s) 480
FriOI GRGCYC 1 cut(s) 931
Fsp4HI GCNGC 1 cut(s) 1275
FspBI CTAG 7 cut(s) 254, 321, 723, 894, 1329, 1508, 1571
GlaI GCGC 1 cut(s) 1397
GluI GCNGC 1 cut(s) 1275
GsuI CTGGAG 3 cut(s) 670, 691, 1093
HaeIII GGCC 6 cut(s) 5, 105, 357, 834, 1435, 1465
HapII CCGG 3 cut(s) 923, 1382, 1491
HgaI GACGC 2 cut(s) 1344, 1375
HhaI GCGC 1 cut(s) 1398
Hin1II CATG 9 cut(s) 42, 52, 74, 350, 844, 903, 1028, 1064, 1543
Hin6I GCGC 1 cut(s) 1396
HinP1I GCGC 1 cut(s) 1396
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 3 cut(s) 1201, 1354, 1391
HpaII CCGG 3 cut(s) 923, 1382, 1491
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 5 cut(s) 667, 744, 801, 849, 1334
Hpy188I TCNGA 7 cut(s) 145, 288, 373, 955, 973, 1353, 1359
Hpy188III TCNNGA 9 cut(s) 254, 278, 303, 436, 649, 713, 1025, 1159, 1382
Hpy8I GTNNAC 5 cut(s) 667, 744, 801, 849, 1334
Hpy99I CGWCG 1 cut(s) 1417
HpyCH4III ACNGT 6 cut(s) 22, 388, 406, 787, 1048, 1293
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 326, 966
HpyF3I CTNAG 3 cut(s) 11, 220, 370
Hsp92II CATG 9 cut(s) 42, 52, 74, 350, 844, 903, 1028, 1064, 1543
HspAI GCGC 1 cut(s) 1396
Kpn2I TCCGGA 1 cut(s) 1381
Ksp22I TGATCA 2 cut(s) 580, 642
Kzo9I GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
LmnI GCTCC 4 cut(s) 672, 715, 926, 1351
Lsp1109I GCAGC 1 cut(s) 1286
LweI GCATC 5 cut(s) 247, 316, 540, 1165, 1249
MabI ACCWGGT 1 cut(s) 595
MaeI CTAG 7 cut(s) 254, 321, 723, 894, 1329, 1508, 1571
MaeIII GTNAC 7 cut(s) 215, 400, 445, 510, 1076, 1166, 1324
MalI GATC 8 cut(s) 252, 290, 375, 582, 621, 644, 732, 1299
MboI GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
MboII GAAGA 7 cut(s) 16, 54, 57, 163, 558, 776, 1298
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 887, 931
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 427, 524, 553, 638, 1014, 1151, 1280
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1363
MmeI TCCRAC 2 cut(s) 521, 1275
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 1381
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 789, 854
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 923, 1382, 1491
MspR9I CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 2 cut(s) 829, 962
MvaI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
MvnI CGCG 2 cut(s) 1338, 1396
MwoI GCNNNNNNNGC 3 cut(s) 189, 326, 966
NciI CCSGG 1 cut(s) 924
NcoI CCATGG 1 cut(s) 1539
NdeII GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
NlaIII CATG 9 cut(s) 42, 52, 74, 350, 844, 903, 1028, 1064, 1543
NlaIV GGNNCC 3 cut(s) 697, 833, 928
NmuCI GTSAC 3 cut(s) 400, 1076, 1324
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PagI TCATGA 1 cut(s) 1024
PctI GAATGC 2 cut(s) 829, 962
PfeI GAWTC 2 cut(s) 1201, 1391
PfoI TCCNGGA 1 cut(s) 922
PkrI GCNGC 1 cut(s) 1276
PleI GAGTC 1 cut(s) 1362
PpsI GAGTC 1 cut(s) 1362
PsiI TTATAA 1 cut(s) 1588
Psp6I CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
PspGI CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
PspN4I GGNNCC 3 cut(s) 697, 833, 928
PspPI GGNCC 2 cut(s) 832, 1463
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 5 cut(s) 233, 773, 868, 984, 1090
RsaNI GTAC 5 cut(s) 232, 772, 867, 983, 1089
SaqAI TTAA 2 cut(s) 789, 854
SatI GCNGC 1 cut(s) 1275
Sau3AI GATC 8 cut(s) 250, 288, 373, 580, 619, 642, 730, 1297
Sau96I GGNCC 2 cut(s) 832, 1463
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 1 cut(s) 1363
ScrFI CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
SduI GDGCHC 2 cut(s) 887, 931
SexAI ACCWGGT 1 cut(s) 595
SfaNI GCATC 5 cut(s) 247, 316, 540, 1165, 1249
SmlI CTYRAG 4 cut(s) 95, 187, 436, 1190
SmoI CTYRAG 4 cut(s) 95, 187, 436, 1190
SpeI ACTAGT 1 cut(s) 1328
SphI GCATGC 1 cut(s) 52
Sse9I AATT 7 cut(s) 427, 524, 553, 638, 1014, 1151, 1280
SspMI CTAG 7 cut(s) 254, 321, 723, 894, 1329, 1508, 1571
StyD4I CCNGG 7 cut(s) 120, 178, 514, 569, 595, 622, 922
StyI CCWWGG 2 cut(s) 1539, 1570
TaaI ACNGT 6 cut(s) 22, 388, 406, 787, 1048, 1293
TaqI TCGA 2 cut(s) 335, 540
TasI AATT 7 cut(s) 427, 524, 553, 638, 1014, 1151, 1280
TatI WGTACW 2 cut(s) 771, 1088
TfiI GAWTC 2 cut(s) 1201, 1391
Tru1I TTAA 2 cut(s) 789, 854
Tru9I TTAA 2 cut(s) 789, 854
TscAI CASTG 3 cut(s) 25, 583, 682
TseFI GTSAC 3 cut(s) 400, 1076, 1324
TseI GCWGC 1 cut(s) 1274
Tsp45I GTSAC 3 cut(s) 400, 1076, 1324
TspDTI ATGAA 5 cut(s) 335, 536, 675, 1244, 1545
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 3 cut(s) 25, 583, 682
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 3 cut(s) 427, 1014, 1151
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 1 cut(s) 52
XmaJI CCTAGG 1 cut(s) 1570
XmiI GTMKAC 3 cut(s) 666, 800, 1333
XspI CTAG 7 cut(s) 254, 321, 723, 894, 1329, 1508, 1571
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.