Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

62012090 .. 62015156

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG391300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATGTTCGGCGGCAGAAGCATGGGCGGCGGAGGAAGTATGTTCCGTTCAGTCAGCAGGGCGGCGCTGACTAGAACTACCGGTGTTGCAATCCAAGAACCCATCACTTCTTCGAGTTCTAACACCAGCACAACCACCACCACGACTGCTACTAGTCCTTCGGCTTCTAGGAATACCCAGAAACCCGGTACGGTTAGTAACCTCTGTCTCTCTTCTCCTACCTCTCCGAATTGTGGGCCCGTTTCTGCGAGTTCCGACGGGCACAACTGGCCCACTTCGCCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCACTCCTACTCATCATCCCCAGTTCATCCGGGATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCCGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTCTGCTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATGGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAATCCTTCTATGCAGGTTGGTATGAATTTCAAGGACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

27.85

Weight (kDa)

4.66

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	740
AciI	CCGC	4 cut(s)	12, 27, 30, 62
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	461, 761
AfaI	GTAC	2 cut(s)	190, 476
AfiI	CCNNNNNNNGG	2 cut(s)	233, 598
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	416, 767
AhlI	ACTAGT	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	3 cut(s)	338, 494, 730
AluI	AGCT	3 cut(s)	338, 494, 730
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	2 cut(s)	236, 269
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	526
ApoI	RAATTY	2 cut(s)	461, 761
AsiGI	ACCGGT	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	5 cut(s)	236, 237, 270, 368, 770
AsuC2I	CCSGG	2 cut(s)	186, 455
AsuHPI	GGTGA	1 cut(s)	733
AvaII	GGWCC	2 cut(s)	368, 770
AxyI	CCTNAGG	1 cut(s)	597
BaeGI	GKGCMC	2 cut(s)	240, 264
BanII	GRGCYC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	731
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	2 cut(s)	110, 556
BcnI	CCSGG	2 cut(s)	186, 455
BcoDI	GTCTC	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	3 cut(s)	72, 153, 168
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	740
BisI	GCNGC	4 cut(s)	13, 28, 63, 527
BlsI	GCNGC	4 cut(s)	14, 29, 64, 528
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	186, 455
Bme18I	GGWCC	2 cut(s)	368, 770
BmgT120I	GGNCC	5 cut(s)	236, 237, 270, 368, 770
BmiI	GGNNCC	3 cut(s)	238, 469, 567
BmrFI	CCNGG	2 cut(s)	186, 455
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	688
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	731
BpuMI	CCSGG	2 cut(s)	186, 455
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 598
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	272, 445
Bse21I	CCTNAGG	1 cut(s)	597
BseGI	GGATG	6 cut(s)	439, 450, 493, 567, 608, 703
BseLI	CCNNNNNNNGG	2 cut(s)	233, 598
BseMII	CTCAG	3 cut(s)	296, 611, 722
BseNI	ACTGG	2 cut(s)	272, 445
BseSI	GKGCMC	2 cut(s)	240, 264
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	591
BsgI	GTGCAG	1 cut(s)	545
BshFI	GGCC	2 cut(s)	238, 271
BshTI	ACCGGT	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	81, 186, 454
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	2 cut(s)	233, 598
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	238, 271
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	240, 264
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	4 cut(s)	12, 27, 30, 62
BspANI	GGCC	2 cut(s)	238, 271
BspCNI	CTCAG	3 cut(s)	295, 610, 723
BspLI	GGNNCC	3 cut(s)	238, 469, 567
BspMI	ACCTGC	1 cut(s)	740
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	272, 445
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	193, 774
Bst6I	CTCTTC	2 cut(s)	217, 417
BstDEI	CTNAG	3 cut(s)	282, 597, 731
BstF5I	GGATG	6 cut(s)	439, 450, 493, 567, 608, 703
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 27, 268, 277, 407
BstSCI	CCNGG	2 cut(s)	184, 453
BstSLI	GKGCMC	2 cut(s)	240, 264
BstV1I	GCAGC	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	2 cut(s)	238, 271
BtsCI	GGATG	6 cut(s)	439, 450, 493, 567, 608, 703
BveI	ACCTGC	1 cut(s)	740
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	5 cut(s)	236, 237, 270, 368, 770
Csp6I	GTAC	2 cut(s)	189, 475
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	2 cut(s)	22, 341
CviJI	RGCY	9 cut(s)	164, 238, 271, 338, 494, 568, 595, 623, 730
CviKI_1	RGCY	9 cut(s)	164, 238, 271, 338, 494, 568, 595, 623, 730
CviQI	GTAC	2 cut(s)	189, 475
DdeI	CTNAG	3 cut(s)	282, 597, 731
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	217, 417
EarI	CTCTTC	2 cut(s)	217, 417
EciI	GGCGGA	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	368, 770
Eco81I	CCTNAGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	2 cut(s)	25, 344
FaiI	YATR	6 cut(s)	23, 41, 342, 618, 747, 759
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	2 cut(s)	21, 340
Fnu4HI	GCNGC	4 cut(s)	13, 28, 63, 527
FokI	GGATG	6 cut(s)	426, 437, 500, 574, 615, 710
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	4 cut(s)	13, 28, 63, 527
FspBI	CTAG	3 cut(s)	72, 153, 168
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	13, 28, 63, 527
GsaI	CCCAGC	1 cut(s)	595
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	238, 271
HapII	CCGG	3 cut(s)	81, 186, 454
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	25, 344
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	3 cut(s)	551, 644, 737
HpaII	CCGG	3 cut(s)	81, 186, 454
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	3 cut(s)	313, 394, 426
Hpy188I	TCNGA	7 cut(s)	228, 256, 472, 501, 556, 657, 682
Hpy188III	TCNNGA	2 cut(s)	350, 381
Hpy8I	GTNNAC	3 cut(s)	313, 394, 426
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	4 cut(s)	168, 387, 579, 751
HpyCH4III	ACNGT	2 cut(s)	193, 774
HpyCH4V	TGCA	4 cut(s)	89, 526, 637, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 27, 268, 277, 407
HpyF3I	CTNAG	3 cut(s)	282, 597, 731
Hsp92II	CATG	2 cut(s)	25, 344
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	496
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	565, 727
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	3 cut(s)	72, 153, 168
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	5 cut(s)	102, 204, 335, 404, 528
MhlI	GDGCHC	2 cut(s)	240, 264
MluCI	AATT	4 cut(s)	229, 461, 586, 761
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	9 cut(s)	26, 212, 232, 291, 606, 613, 709, 717, 726
MspI	CCGG	3 cut(s)	81, 186, 454
MspR9I	CCNGG	2 cut(s)	186, 455
MwoI	GCNNNNNNNGC	5 cut(s)	18, 27, 268, 277, 407
NciI	CCSGG	2 cut(s)	186, 455
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	2 cut(s)	25, 344
NlaIV	GGNNCC	3 cut(s)	238, 469, 567
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	551, 737
PfoI	TCCNGGA	1 cut(s)	453
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	14, 29, 64, 528
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PspFI	CCCAGC	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	238, 469, 567
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	5 cut(s)	236, 237, 270, 368, 770
PsrI	GAACNNNNNNTAC	2 cut(s)	31, 63
RsaI	GTAC	2 cut(s)	190, 476
RsaNI	GTAC	2 cut(s)	189, 475
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	4 cut(s)	13, 28, 63, 527
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	5 cut(s)	236, 237, 270, 368, 770
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	186, 455
SduI	GDGCHC	2 cut(s)	240, 264
SfaNI	GCATC	1 cut(s)	688
SinI	GGWCC	2 cut(s)	368, 770
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	4 cut(s)	229, 461, 586, 761
SsiI	CCGC	4 cut(s)	12, 27, 30, 62
SspMI	CTAG	3 cut(s)	72, 153, 168
StyD4I	CCNGG	2 cut(s)	184, 453
TaaI	ACNGT	2 cut(s)	193, 774
TaqI	TCGA	2 cut(s)	113, 297
TasI	AATT	4 cut(s)	229, 461, 586, 761
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	3 cut(s)	15, 30, 65
TfiI	GAWTC	2 cut(s)	551, 737
TseI	GCWGC	1 cut(s)	526
TspDTI	ATGAA	6 cut(s)	402, 439, 528, 660, 722, 774
TspGWI	ACGGA	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	368, 770
XapI	RAATTY	2 cut(s)	461, 761
XspI	CTAG	3 cut(s)	72, 153, 168
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.