Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

28037772 .. 28039985

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1181400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGCGGAGGTGGTGGAGGAGGAAGCGTGTTTAGGACTGTGAGTAGGGCAGCAGTCACCAGAACTGTTACTGGTGGCCCACCAATTCAAGAACCCCTTTCTTCTTCTTCCAGTTCTCCTGCTACTGCGAATACCACCACCACCACTTCCACTTCTAGGCACACCCAGAAGCCCAGTTCTTCCCACAACCTCTCTCTCTCCTCACCCACCTCACCTTTTGCCTCGTGCAATAATCCTCTGGCTTCCAATTGTGCCACGCCCGGCTGGCCTTCTTCCCCTCGCCTTGATGATTTTGATTGGGTGACTGTGGATAATGGCGTTAGCAGTGAGGATGATGAGAGAGTTTCACATGGGTTTCTTGATGATTTTGTTCTTGGACCTGTTCCTTCCAAGGATGAAGTTCACAGTGCTGTCTCTGCCCTTCAACAGGTTATCAGTCCCTTCATCAGGGATAAGTTTGGTTCTGAGTCAGACAGAGCTGTGGATGATCAAATTACAAGTGCTTCTGCTGGGTTTGTGCACCCAGCATCTTCAGCTGGGTCAGAATTAGATTGGATGGAGCCTTCTGCCTATCTTTCTAATAGTTCAAGGATGTTGCAGTCTTATGGGTCTGAAAGAGTTTATGATGCTTTCCATCTCTTGCAGACCGAGTCTTCTGTGCAGAGAATGGTGATCTCATTGTCATCTGATAGAGCAGTTTGGGATGCGGTGATGAACAACGAGGTGGTGCGGGAGCTCCGGGAATCTTTCTATGCAGATGAAGACAATAAATCCGAGAGTCCAGATGAGAATTCTGATGATAACGATAAAGCAACAAACATTGTCAAGTGGATCTTTCAAAATACCATGGCAAAAGTCATGGAAGCAGTCGAGAAAATTACAAAGATCATCGGCGACTTATTTCAACCTCCAAGCAGGGAAAACGCGAAAGCAGAACCCAGCAATCGCTTTGAGGACAGGCTGAAAAAATCGTTCATGCTCTCCGTTGTGGTCCTGTTGATTGTGGTGGTTACTCGAACCCACAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

37.18

Weight (kDa)

4.95

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	926
AciI	CCGC	3 cut(s)	6, 707, 730
AclWI	GGATC	1 cut(s)	839
AcsI	RAATTY	1 cut(s)	790
AcuI	CTGAAG	1 cut(s)	516
AfiI	CCNNNNNNNGG	3 cut(s)	156, 427, 447
AgsI	TTSAA	5 cut(s)	89, 425, 588, 839, 905
AluBI	AGCT	3 cut(s)	479, 536, 736
AluI	AGCT	3 cut(s)	479, 536, 736
Alw21I	GWGCWC	2 cut(s)	522, 738
Alw26I	GTCTC	1 cut(s)	418
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	839
AoxI	GGCC	3 cut(s)	76, 266, 1026
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	790
AspS9I	GGNCC	3 cut(s)	77, 377, 991
AsuC2I	CCSGG	2 cut(s)	261, 740
AsuHPI	GGTGA	6 cut(s)	49, 195, 204, 313, 682, 721
AvaII	GGWCC	2 cut(s)	377, 991
BaeGI	GKGCMC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	738
BauI	CACGAG	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	645, 768
Bbv12I	GWGCWC	2 cut(s)	522, 738
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	550, 642
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	261, 740
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	261, 740
Bme18I	GGWCC	2 cut(s)	377, 991
BmgT120I	GGNCC	3 cut(s)	77, 377, 991
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	2 cut(s)	261, 740
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	536, 616, 694
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	2 cut(s)	645, 768
BpuMI	CCSGG	2 cut(s)	261, 740
BsaJI	CCNNGG	2 cut(s)	390, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 427, 447
Bse1I	ACTGG	3 cut(s)	76, 111, 174
BseDI	CCNNGG	2 cut(s)	390, 846
BseGI	GGATG	6 cut(s)	337, 400, 490, 561, 597, 709
BseLI	CCNNNNNNNGG	3 cut(s)	156, 427, 447
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	76, 111, 174
BseRI	GAGGAG	2 cut(s)	33, 190
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	4 cut(s)	509, 523, 536, 938
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	926
BshFI	GGCC	3 cut(s)	78, 268, 1028
BsiHKAI	GWGCWC	2 cut(s)	522, 738
BsiSI	CCGG	2 cut(s)	261, 739
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	3 cut(s)	156, 427, 447
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	78, 268, 1028
Bsp1286I	GDGCHC	2 cut(s)	522, 738
Bsp143I	GATC	4 cut(s)	487, 672, 831, 885
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	3 cut(s)	6, 707, 730
BspANI	GGCC	3 cut(s)	78, 268, 1028
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	926
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	839
BsrI	ACTGG	3 cut(s)	76, 111, 174
BssECI	CCNNGG	2 cut(s)	390, 846
BssMI	GATC	4 cut(s)	487, 672, 831, 885
BssSI	CACGAG	1 cut(s)	223
BssT1I	CCWWGG	2 cut(s)	390, 846
Bst2BI	CACGAG	1 cut(s)	223
Bst4CI	ACNGT	4 cut(s)	40, 67, 307, 407
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	1 cut(s)	846
BstENI	CCTNNNNNAGG	2 cut(s)	425, 445
BstF5I	GGATG	6 cut(s)	337, 400, 490, 561, 597, 709
BstFNI	CGCG	1 cut(s)	926
BstKTI	GATC	4 cut(s)	490, 675, 834, 888
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	4 cut(s)	487, 672, 831, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 416, 533
BstSCI	CCNGG	2 cut(s)	259, 738
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	1 cut(s)	926
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	645, 768
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
BsuRI	GGCC	3 cut(s)	78, 268, 1028
BtgI	CCRYGG	1 cut(s)	846
BtsCI	GGATG	6 cut(s)	337, 400, 490, 561, 597, 709
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	331, 412
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	77, 377, 991
CviAII	CATG	4 cut(s)	350, 847, 859, 976
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	4 cut(s)	489, 674, 833, 887
DpnII	GATC	4 cut(s)	487, 672, 831, 885
EciI	GGCGGA	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	736
Eco130I	CCWWGG	2 cut(s)	390, 846
Eco147I	AGGCCT	1 cut(s)	1028
Eco24I	GRGCYC	1 cut(s)	738
Eco47I	GGWCC	2 cut(s)	377, 991
Eco53kI	GAGCTC	1 cut(s)	736
Eco57I	CTGAAG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	736
EcoNI	CCTNNNNNAGG	2 cut(s)	425, 445
EcoRI	GAATTC	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	390, 846
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	390, 846
FaeI	CATG	4 cut(s)	353, 850, 862, 979
FaiI	YATR	7 cut(s)	351, 606, 624, 753, 848, 860, 977
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 818, 850
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	4 cut(s)	349, 846, 858, 975
FauI	CCCGC	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	6 cut(s)	344, 407, 497, 568, 604, 716
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	4 cut(s)	513, 527, 540, 942
HaeIII	GGCC	3 cut(s)	78, 268, 1028
HapII	CCGG	2 cut(s)	261, 739
Hin1II	CATG	4 cut(s)	353, 850, 862, 979
HinfI	GANTC	4 cut(s)	467, 650, 743, 778
HpaII	CCGG	2 cut(s)	261, 739
HphI	GGTGA	6 cut(s)	49, 195, 204, 313, 682, 721
Hpy166II	GTNNAC	2 cut(s)	403, 520
Hpy188I	TCNGA	7 cut(s)	466, 472, 544, 613, 688, 775, 796
Hpy188III	TCNNGA	4 cut(s)	89, 359, 782, 871
Hpy8I	GTNNAC	2 cut(s)	403, 520
HpyAV	CCTTC	5 cut(s)	279, 396, 431, 451, 573
HpyCH4III	ACNGT	4 cut(s)	40, 67, 307, 407
HpyCH4V	TGCA	6 cut(s)	228, 520, 598, 643, 661, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 416, 533
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	4 cut(s)	353, 850, 862, 979
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	487, 672, 831, 885
LmnI	GCTCC	3 cut(s)	559, 733, 741
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	3 cut(s)	536, 616, 694
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	4 cut(s)	55, 67, 301, 1009
MalI	GATC	4 cut(s)	489, 674, 833, 887
MboI	GATC	4 cut(s)	487, 672, 831, 885
MboII	GAAGA	8 cut(s)	93, 96, 99, 171, 264, 522, 645, 773
MfeI	CAATTG	1 cut(s)	247
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	2 cut(s)	522, 738
MluCI	AATT	6 cut(s)	84, 247, 492, 545, 790, 876
MlyI	GAGTC	3 cut(s)	476, 659, 787
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	261, 739
MspR9I	CCNGG	2 cut(s)	261, 740
MunI	CAATTG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	926
MwoI	GCNNNNNNNGC	3 cut(s)	265, 416, 533
NciI	CCSGG	2 cut(s)	261, 740
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	4 cut(s)	487, 672, 831, 885
NlaIII	CATG	4 cut(s)	353, 850, 862, 979
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	2 cut(s)	55, 301
PceI	AGGCCT	1 cut(s)	1028
PfeI	GAWTC	1 cut(s)	743
PflFI	GACNNNGTC	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	3 cut(s)	475, 658, 786
PpsI	GAGTC	3 cut(s)	475, 658, 786
Psp124BI	GAGCTC	1 cut(s)	738
PspFI	CCCAGC	4 cut(s)	509, 523, 536, 938
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	3 cut(s)	77, 377, 991
PsuI	RGATCY	1 cut(s)	831
PsyI	GACNNNGTC	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	738
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	4 cut(s)	487, 672, 831, 885
Sau96I	GGNCC	3 cut(s)	77, 377, 991
SchI	GAGTC	3 cut(s)	476, 659, 787
ScrFI	CCNGG	2 cut(s)	261, 740
SduI	GDGCHC	2 cut(s)	522, 738
SfaNI	GCATC	3 cut(s)	536, 616, 694
SinI	GGWCC	2 cut(s)	377, 991
Sse9I	AATT	6 cut(s)	84, 247, 492, 545, 790, 876
SseBI	AGGCCT	1 cut(s)	1028
SsiI	CCGC	3 cut(s)	6, 707, 730
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	738
StuI	AGGCCT	1 cut(s)	1028
StyD4I	CCNGG	2 cut(s)	259, 738
StyI	CCWWGG	2 cut(s)	390, 846
TaaI	ACNGT	4 cut(s)	40, 67, 307, 407
TaqI	TCGA	2 cut(s)	870, 1015
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	6 cut(s)	84, 247, 492, 545, 790, 876
TfiI	GAWTC	1 cut(s)	743
TscAI	CASTG	2 cut(s)	331, 412
TseFI	GTSAC	2 cut(s)	55, 301
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	55, 301
TspDTI	ATGAA	5 cut(s)	411, 433, 728, 774, 964
TspGWI	ACGGA	1 cut(s)	973
TspRI	CASTG	2 cut(s)	331, 412
Tth111I	GACNNNGTC	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	377, 991
XagI	CCTNNNNNAGG	2 cut(s)	425, 445
XapI	RAATTY	1 cut(s)	790
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.