Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

27731184 .. 27733889

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G275300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATGTTTGGTGGAAAAAGCATGGGAGGTGGAGGAGGAGGAGGAGGAAGCATGTTCAGGGCTGTGAGCAGAGCAGCAGTCACAAGAAGTGTTGCTGGTGGCCCACCAATTCAAGAACCCCTTTCTTCTTCTAATTCTAATTCTTCAGCTACTAACACCACCACTACTGCAACTACAACTTCTAGGCACACCCAAAAACCTAGTTCCTCCAATAACCTCTCTCTCTCTTCACCCTCTTCACCTTTTGCTTCATACAACCTTCCTCTGTCTGCCAATTCTGGCATACCCAGCTGGCCTTCTTCTCCTCATTTTGATGACATTGATTGGGTGACTGTGGATAATGGGAGCAGTGAAGAAGATGATGAGAGAAGATATGGATTTCTTGAGGATTTTGTTCTTGGGCCTGTTCCTTCCAGGGATGAAGTTCAAAACGCTGTCTCTGCCCTTCAACAGGTTTTCAGTCCTTCTTCTCATGCCCAGTTCGTCAGGGATAAATATGCTTCTGAGTTGGAGAGGGATGTGGCTGATCAAATCTCAAGTGCCTCAGCTGGTTTGGTGGACAGAGTGTCCTCAGTTGGGTCAGAGTTAGATTGGATGGAGCCTTCTGCGTATCTATGTAATTCAAAGATGTTGCAGCCTCATGCTTCTGAGAGAGTTTATGATGCTTTCCATTTATTGCAGACTGAGTCATCCGTGCAGAGAATGGTGATCTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAACAATGAGGTGGTGCGGGAGCTCAGGGAATCTTTCTATGCAGCTGAAGACAATAGCTCCCAGAGTCCCAATGAGGACACCGATGATAAAAATAAAGCAACAAACATTGTGAAGTGGATCTTCCAAAACACCATGGCGAAAGTCATGGAAGTAATTGAGAAAATTACAAAGGTCCTGGGTGACTTAATTCAACCTCCAGGCGATGAGAAGGCGAATGCAGGAGCTAGCAATCGCTTTGAGGAGAAGCTGAGAACATCGTTCATGCTCTCCGTTGTGGTCCTCTTGGTTGTGGTGGTTTCTCGAAGCCACAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

38.43

Weight (kDa)

4.97

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	1 cut(s)	875
AcuI	CTGAAG	2 cut(s)	129, 816
AfiI	CCNNNNNNNGG	2 cut(s)	451, 576
AgsI	TTSAA	5 cut(s)	113, 428, 449, 624, 941
AhdI	GACNNNNNGTC	1 cut(s)	565
AjnI	CCWGG	3 cut(s)	413, 924, 946
AluBI	AGCT	8 cut(s)	149, 291, 548, 772, 794, 807, 974, 997
AluI	AGCT	8 cut(s)	149, 291, 548, 772, 794, 807, 974, 997
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	875
AoxI	GGCC	3 cut(s)	100, 293, 401
ApeKI	GCWGC	3 cut(s)	74, 634, 791
AspS9I	GGNCC	4 cut(s)	101, 401, 922, 1027
AsuHPI	GGTGA	5 cut(s)	222, 231, 340, 718, 941
AsuNHI	GCTAGC	1 cut(s)	974
AvaII	GGWCC	2 cut(s)	922, 1027
BanII	GRGCYC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	544
BbvI	GCAGC	3 cut(s)	86, 646, 803
BccI	CCATC	1 cut(s)	589
BciT130I	CCWGG	3 cut(s)	415, 926, 948
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	3 cut(s)	183, 201, 975
BisI	GCNGC	3 cut(s)	75, 635, 792
BlsI	GCNGC	3 cut(s)	76, 636, 793
Bme1390I	CCNGG	3 cut(s)	415, 926, 948
Bme18I	GGWCC	2 cut(s)	922, 1027
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	4 cut(s)	101, 401, 922, 1027
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	415, 926, 948
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	652, 730
BmtI	GCTAGC	1 cut(s)	978
BmuI	ACTGGG	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	930
Bpu10I	CCTNAGC	2 cut(s)	544, 773
BpuEI	CTTGAG	2 cut(s)	404, 520
BsaJI	CCNNGG	3 cut(s)	414, 882, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 576
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	3 cut(s)	415, 926, 948
BseDI	CCNNGG	3 cut(s)	414, 882, 925
BseGI	GGATG	5 cut(s)	424, 523, 600, 689, 745
BseLI	CCNNNNNNNGG	2 cut(s)	451, 576
BseMII	CTCAG	7 cut(s)	495, 558, 585, 639, 675, 787, 989
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	6 cut(s)	48, 51, 54, 57, 294, 1004
BseXI	GCAGC	3 cut(s)	86, 646, 803
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	716
BshFI	GGCC	3 cut(s)	102, 295, 403
BsiHKAI	GWGCWC	1 cut(s)	774
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	2 cut(s)	451, 576
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	801
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	3 cut(s)	102, 295, 403
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp143I	GATC	3 cut(s)	526, 708, 867
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	1 cut(s)	766
BspANI	GGCC	3 cut(s)	102, 295, 403
BspCNI	CTCAG	7 cut(s)	496, 557, 584, 640, 676, 786, 990
BspLI	GGNNCC	1 cut(s)	600
BspOI	GCTAGC	1 cut(s)	978
BspPI	GGATC	1 cut(s)	875
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	3 cut(s)	414, 882, 925
BssMI	GATC	3 cut(s)	526, 708, 867
BssT1I	CCWWGG	1 cut(s)	882
Bst2UI	CCWGG	3 cut(s)	415, 926, 948
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	2 cut(s)	232, 241
BstC8I	GCNNGC	2 cut(s)	293, 976
BstDEI	CTNAG	7 cut(s)	504, 544, 571, 648, 684, 773, 998
BstDSI	CCRYGG	1 cut(s)	882
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	5 cut(s)	424, 523, 600, 689, 745
BstKTI	GATC	3 cut(s)	529, 711, 870
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	3 cut(s)	526, 708, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 440
BstNI	CCWGG	3 cut(s)	415, 926, 948
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	413, 924, 946
BstV1I	GCAGC	3 cut(s)	86, 646, 803
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	867
BsuRI	GGCC	3 cut(s)	102, 295, 403
BtgI	CCRYGG	1 cut(s)	882
BtgZI	GCGATG	1 cut(s)	966
BtsCI	GGATG	5 cut(s)	424, 523, 600, 689, 745
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	293, 976
Cfr13I	GGNCC	4 cut(s)	101, 401, 922, 1027
CspCI	CAANNNNNGTGG	1 cut(s)	1046
CviAII	CATG	7 cut(s)	22, 52, 473, 641, 883, 895, 1012
DdeI	CTNAG	7 cut(s)	504, 544, 571, 648, 684, 773, 998
DpnI	GATC	3 cut(s)	528, 710, 869
DpnII	GATC	3 cut(s)	526, 708, 867
DriI	GACNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	232, 241
Eam1105I	GACNNNNNGTC	1 cut(s)	565
EarI	CTCTTC	2 cut(s)	232, 241
Ecl136II	GAGCTC	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	774
Eco47I	GGWCC	2 cut(s)	922, 1027
Eco53kI	GAGCTC	1 cut(s)	772
Eco57I	CTGAAG	2 cut(s)	129, 816
EcoICRI	GAGCTC	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	922
EcoRII	CCWGG	3 cut(s)	413, 924, 946
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	7 cut(s)	25, 55, 476, 644, 886, 898, 1015
FalI	AAGNNNNNCTT	4 cut(s)	105, 137, 854, 886
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	7 cut(s)	21, 51, 472, 640, 882, 894, 1011
FauI	CCCGC	1 cut(s)	759
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	75, 635, 792
FokI	GGATG	5 cut(s)	431, 530, 607, 676, 752
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	75, 635, 792
FspBI	CTAG	3 cut(s)	183, 201, 975
GluI	GCNGC	3 cut(s)	75, 635, 792
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	3 cut(s)	102, 295, 403
Hin1II	CATG	7 cut(s)	25, 55, 476, 644, 886, 898, 1015
HinfI	GANTC	3 cut(s)	686, 779, 814
HphI	GGTGA	5 cut(s)	222, 231, 340, 718, 941
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	4 cut(s)	505, 583, 649, 724
Hpy188III	TCNNGA	3 cut(s)	113, 383, 1050
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	7 cut(s)	269, 306, 420, 455, 474, 612, 952
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	6 cut(s)	170, 634, 679, 697, 791, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 440
HpyF3I	CTNAG	7 cut(s)	504, 544, 571, 648, 684, 773, 998
Hsp92II	CATG	7 cut(s)	25, 55, 476, 644, 886, 898, 1015
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	526, 708, 867
LmnI	GCTCC	5 cut(s)	345, 598, 769, 812, 971
Lsp1109I	GCAGC	3 cut(s)	86, 646, 803
LweI	GCATC	2 cut(s)	652, 730
MaeI	CTAG	3 cut(s)	183, 201, 975
MaeIII	GTNAC	3 cut(s)	79, 328, 929
MalI	GATC	3 cut(s)	528, 710, 869
MboI	GATC	3 cut(s)	526, 708, 867
MflI	RGATCY	1 cut(s)	867
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	8 cut(s)	108, 133, 139, 274, 619, 903, 912, 936
MlyI	GAGTC	2 cut(s)	695, 823
MmeI	TCCRAC	1 cut(s)	489
MseI	TTAA	1 cut(s)	935
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	3 cut(s)	291, 548, 794
MspR9I	CCNGG	3 cut(s)	415, 926, 948
Mva1269I	GAATGC	1 cut(s)	970
MvaI	CCWGG	3 cut(s)	415, 926, 948
MwoI	GCNNNNNNNGC	2 cut(s)	288, 440
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	3 cut(s)	526, 708, 867
NheI	GCTAGC	1 cut(s)	974
NlaIII	CATG	7 cut(s)	25, 55, 476, 644, 886, 898, 1015
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	3 cut(s)	79, 328, 929
NspI	RCATGY	1 cut(s)	55
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	1 cut(s)	779
PflFI	GACNNNGTC	1 cut(s)	685
PkrI	GCNGC	3 cut(s)	76, 636, 793
PleI	GAGTC	2 cut(s)	694, 822
PpsI	GAGTC	2 cut(s)	694, 822
PpuMI	RGGWCCY	1 cut(s)	922
Psp124BI	GAGCTC	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	3 cut(s)	413, 924, 946
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	3 cut(s)	413, 924, 946
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	4 cut(s)	101, 401, 922, 1027
PspPPI	RGGWCCY	1 cut(s)	922
PsuI	RGATCY	1 cut(s)	867
PsyI	GACNNNGTC	1 cut(s)	685
PvuII	CAGCTG	3 cut(s)	291, 548, 794
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	935
SatI	GCNGC	3 cut(s)	75, 635, 792
Sau3AI	GATC	3 cut(s)	526, 708, 867
Sau96I	GGNCC	4 cut(s)	101, 401, 922, 1027
SchI	GAGTC	2 cut(s)	695, 823
ScrFI	CCNGG	3 cut(s)	415, 926, 948
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	2 cut(s)	652, 730
SinI	GGWCC	2 cut(s)	922, 1027
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	383, 535
SmoI	CTYRAG	2 cut(s)	383, 535
Sse9I	AATT	8 cut(s)	108, 133, 139, 274, 619, 903, 912, 936
SsiI	CCGC	1 cut(s)	766
SspMI	CTAG	3 cut(s)	183, 201, 975
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	3 cut(s)	413, 924, 946
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	1051
TasI	AATT	8 cut(s)	108, 133, 139, 274, 619, 903, 912, 936
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	1 cut(s)	935
Tru9I	TTAA	1 cut(s)	935
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	3 cut(s)	79, 328, 929
TseI	GCWGC	3 cut(s)	74, 634, 791
Tsp45I	GTSAC	3 cut(s)	79, 328, 929
TspDTI	ATGAA	4 cut(s)	240, 435, 764, 1000
TspGWI	ACGGA	2 cut(s)	682, 1009
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	685
VpaK11BI	GGWCC	2 cut(s)	922, 1027
XagI	CCTNNNNNAGG	1 cut(s)	449
XceI	RCATGY	1 cut(s)	55
XspI	CTAG	3 cut(s)	183, 201, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.