Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

3864506 .. 3865268

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACGTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAATGCTGTTTCTGCTCTTCAACAGGTGTTCAGTCCAACTCATCACCCCCAGTTTATCTGTTATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCTGATTTTGAGTGCTTCTGGTTTGGTGCAGCGAGTATCTTCATTTGGGACAAAATCAGATTGGATAGAGCCTTCTGTTTACCTTTGTAATTCCCAGCCTCAGGGACGTCAAAGAATCAGATTGGAGGGTCATCTTGGTTTTGGTTTTAAAGAATTGAATTTGGCTTTCATTATGTTAGATAAGAAATTAGTTGTGGGAGAGTTCGAACATGGAGAGGCCCATGTGGAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.44

Weight (kDa)

4.97

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AatII	GACGTC	1 cut(s)	298
AcsI	RAATTY	2 cut(s)	152, 346
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	107, 346
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	29, 185
AluI	AGCT	2 cut(s)	29, 185
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	152, 346
AspS9I	GGNCC	2 cut(s)	59, 406
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
BmcAI	AGTACT	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 406
BmiI	GGNNCC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	407
BslFI	GGGAC	2 cut(s)	250, 306
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmFI	GGGAC	2 cut(s)	250, 306
BsnI	GGCC	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	59, 406
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	32, 398, 410
CviJI	RGCY	6 cut(s)	29, 185, 259, 286, 353, 407
CviKI_1	RGCY	6 cut(s)	29, 185, 259, 286, 353, 407
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DraI	TTTAAA	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	288
FaeI	CATG	3 cut(s)	35, 401, 413
FaiI	YATR	5 cut(s)	33, 150, 362, 399, 411
FaqI	GGGAC	2 cut(s)	250, 306
FatI	CATG	3 cut(s)	31, 397, 409
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	3 cut(s)	35, 401, 413
HinfI	GANTC	1 cut(s)	303
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	85, 268
Hpy188I	TCNGA	4 cut(s)	163, 192, 247, 308
Hpy188III	TCNNGA	2 cut(s)	41, 72
Hpy8I	GTNNAC	2 cut(s)	85, 268
HpyAV	CCTTC	3 cut(s)	78, 270, 410
HpyCH4IV	ACGT	2 cut(s)	48, 295
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	48, 295
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	3 cut(s)	35, 401, 413
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	7 cut(s)	57, 75, 95, 149, 192, 275, 296
Lsp1109I	GCAGC	1 cut(s)	229
MaeII	ACGT	2 cut(s)	48, 295
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	26, 95, 219
MluCI	AATT	5 cut(s)	152, 277, 341, 346, 374
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	297, 307, 397
MseI	TTAA	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	3 cut(s)	35, 401, 413
NlaIV	GGNNCC	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	59, 406
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	59, 406
ScaI	AGTACT	1 cut(s)	167
SetI	ASST	8 cut(s)	31, 51, 64, 114, 187, 273, 298, 421
SfuI	TTCGAA	1 cut(s)	393
SinI	GGWCC	1 cut(s)	59
Sse9I	AATT	5 cut(s)	152, 277, 341, 346, 374
TaiI	ACGT	2 cut(s)	51, 298
TaqI	TCGA	1 cut(s)	393
TasI	AATT	5 cut(s)	152, 277, 341, 346, 374
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	93, 219, 346
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	2 cut(s)	152, 346
ZraI	GACGTC	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.