Rmu_sc0001684.1_g000005

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001684.1
OG0002211
Physical Location & Seq
Reverse (-)
24917 .. 26223
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001684.1_g000005.1.cds

Sequence Viewer

Length: 573 bp
atggaactatgtgaccttgcttctagtagtggccggaggacgtgcagtctgccgtggactcgtcagaggaaggcgaagaagatggtggctgcggaggaagaagcgcatatgcgacaccgattttacttccgtgtgcctgtttctgttagttccagcaggtccaactggcccacttcacctcagtttgatgatttcgattgggtttctgtggacgggagtgaagatgttgagaaagctcatgggtttcttgatgactttgttcttggacctgttccttctggagatgaagttcacaacgctgtttctgctcttcaacaggtgttcagtccgactcatcacccccagtttatctgttataaatttggttccgagtacttggacaaggatatagctgatcagattttgagtgcttctggtttggtgcagcaagtatcttcatttgggacagaatcagattggatggagccttatgtttacctttgtaattcccagcctcagggacgtcaaagagtttatgaggctttcagtttattgcagaatgagtcatctgttcaggtccctatatcttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.45

Weight (kDa)

5.05

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AatII GACGTC 1 cut(s) 505
Acc36I ACCTGC 1 cut(s) 147
AciI CCGC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 502
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 1 cut(s) 314
AhdI GACNNNNNGTC 1 cut(s) 45
AjiI CACGTC 1 cut(s) 42
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 2 cut(s) 236, 392
AluI AGCT 2 cut(s) 236, 392
AoxI GGCC 2 cut(s) 31, 167
ApeKI GCWGC 2 cut(s) 89, 424
ApoI RAATTY 1 cut(s) 359
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 4 cut(s) 159, 168, 266, 556
AsuHPI GGTGA 2 cut(s) 168, 329
AvaII GGWCC 3 cut(s) 159, 266, 556
AxyI CCTNAGG 1 cut(s) 495
BbvI GCAGC 2 cut(s) 76, 436
BccI CCATC 2 cut(s) 76, 454
BceAI ACGGC 1 cut(s) 37
BclI TGATCA 1 cut(s) 394
BfaI CTAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 2 cut(s) 90, 425
BlsI GCNGC 2 cut(s) 91, 426
BmcAI AGTACT 1 cut(s) 374
Bme18I GGWCC 3 cut(s) 159, 266, 556
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 4 cut(s) 159, 168, 266, 556
BmiI GGNNCC 3 cut(s) 367, 465, 558
BmrI ACTGGG 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 502
BsaJI CCNNGG 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 2 cut(s) 170, 343
Bse21I CCTNAGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 194, 509
BseNI ACTGG 2 cut(s) 170, 343
BseXI GCAGC 2 cut(s) 76, 436
BseYI CCCAGC 1 cut(s) 489
BsgI GTGCAG 2 cut(s) 64, 443
BshFI GGCC 2 cut(s) 33, 169
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 3 cut(s) 457, 513, 542
BslI CCNNNNNNNGG 1 cut(s) 496
BsmFI GGGAC 3 cut(s) 457, 513, 542
BsnI GGCC 2 cut(s) 33, 169
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 33, 169
BspCNI CTCAG 2 cut(s) 193, 508
BspLI GGNNCC 3 cut(s) 367, 465, 558
BspMI ACCTGC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 315
BsrI ACTGG 2 cut(s) 170, 343
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 502
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 502
BstDEI CTNAG 2 cut(s) 180, 495
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 465
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 397
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 76, 436
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 2 cut(s) 33, 169
BtgI CCRYGG 1 cut(s) 53
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 4 cut(s) 159, 168, 266, 556
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 239
CviJI RGCY 8 cut(s) 33, 89, 169, 236, 392, 466, 493, 521
CviKI_1 RGCY 8 cut(s) 33, 89, 169, 236, 392, 466, 493, 521
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 180, 495
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DriI GACNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 315
Eam1105I GACNNNNNGTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 315
Eco47I GGWCC 3 cut(s) 159, 266, 556
Eco81I CCTNAGG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 556
FaeI CATG 1 cut(s) 242
FaiI YATR 9 cut(s) 10, 108, 110, 240, 357, 389, 471, 516, 563
FaqI GGGAC 3 cut(s) 457, 513, 542
FatI CATG 1 cut(s) 238
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 90, 425
FokI GGATG 1 cut(s) 472
Fsp4HI GCNGC 2 cut(s) 90, 425
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 90, 425
GsaI CCCAGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 2 cut(s) 33, 169
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 4 cut(s) 58, 331, 449, 542
HpaII CCGG 1 cut(s) 34
HphI GGTGA 2 cut(s) 168, 329
Hpy166II GTNNAC 4 cut(s) 57, 211, 292, 475
Hpy188I TCNGA 5 cut(s) 66, 330, 370, 399, 454
Hpy188III TCNNGA 2 cut(s) 248, 279
Hpy8I GTNNAC 4 cut(s) 57, 211, 292, 475
HpyAV CCTTC 2 cut(s) 64, 285
HpyCH4IV ACGT 2 cut(s) 41, 502
HpyCH4V TGCA 3 cut(s) 45, 424, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 180, 495
HpySE526I ACGT 2 cut(s) 41, 502
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 1 cut(s) 394
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 2 cut(s) 76, 436
MaeI CTAG 1 cut(s) 24
MaeII ACGT 2 cut(s) 41, 502
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 6 cut(s) 88, 91, 110, 233, 302, 426
MluCI AATT 2 cut(s) 359, 484
MlyI GAGTC 3 cut(s) 52, 325, 551
MmeI TCCRAC 2 cut(s) 186, 353
MnlI CCTC 6 cut(s) 30, 60, 88, 189, 504, 511
MspI CCGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeI CATATG 1 cut(s) 108
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 3 cut(s) 367, 465, 558
NmuCI GTSAC 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 91, 426
PleI GAGTC 3 cut(s) 52, 325, 550
PpsI GAGTC 3 cut(s) 52, 325, 550
PpuMI RGGWCCY 1 cut(s) 556
PsiI TTATAA 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 489
PspN4I GGNNCC 3 cut(s) 367, 465, 558
PspPI GGNCC 4 cut(s) 159, 168, 266, 556
PspPPI RGGWCCY 1 cut(s) 556
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SapI GCTCTTC 1 cut(s) 315
SatI GCNGC 2 cut(s) 90, 425
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 4 cut(s) 159, 168, 266, 556
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 3 cut(s) 52, 325, 551
SinI GGWCC 3 cut(s) 159, 266, 556
Sse9I AATT 2 cut(s) 359, 484
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 24
TaiI ACGT 2 cut(s) 44, 505
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 359, 484
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 1 cut(s) 449
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 89, 424
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 300, 426
TspGWI ACGGA 1 cut(s) 119
VpaK11BI GGWCC 3 cut(s) 159, 266, 556
XapI RAATTY 1 cut(s) 359
XspI CTAG 1 cut(s) 24
ZraI GACGTC 1 cut(s) 503
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.