Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

23755831 .. 23757071

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGTTTGGTGGGAGAAGCATGGGCGGAGGAGGTGGAGGAGGAAGCATGTTTAAGGCTGTGAGTAGGGCAGCAGTCACCAGAACTATTGCTGGTGGCCCACCAATTCAAGAACCCCTATCTTCTTCTTCCAGTTCTACTGCTGCTAATACCACCACCACAAATACTACCGCCACCTCCACTTCTAGGCACAACCAGAAGCCCAGTTCTTCCCACAACCTCTCTCTCTCCTCACCCACTTCTCCCTTTTCCTCATGCAATATTCCTCTGGCTTCCAATTCTGGGACACCCAGTTGGCCTTCTTCCCCTCGCTTTGATGATTTTGATTGGGTGACTGTGGATAATGGGGTTAGCAGTGAGGATGATGAGAGGCTTTCACATGGGTTTATTGATGATTTTGTTCTTGGACCTGTTCCTTCCAAGCATGAAGTTCACAATGCTGTCTCTGCCCTTCAACAGGTTCTCAGTCCTTTCATCAGGGATAAGTTTGGTTCTGAGTCAGACAGAGATGTGGATGATCAAATTACAAGTCCTTCTGCTGGGTTTGTGCACCCAGCACCTTCAGCTGGGTCAGAATTAGATTGGATGGAGCCTTCTGCCTATCTTTGTAATAATTCAAAAATGTTGCAGTCTCACGGTGTTGAGAGAGTTTATGATGCTTTCCATCTCTTGCAGACTGATTTCTTGTGCAGAGAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

24.85

Weight (kDa)

5.1

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	27, 171
AcuI	CTGAAG	1 cut(s)	546
AfiI	CCNNNNNNNGG	5 cut(s)	186, 282, 457, 539, 566
AgsI	TTSAA	3 cut(s)	110, 455, 618
AluBI	AGCT	1 cut(s)	566
AluI	AGCT	1 cut(s)	566
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	2 cut(s)	448, 636
Alw44I	GTGCAC	1 cut(s)	548
AoxI	GGCC	2 cut(s)	97, 296
ApaLI	GTGCAC	1 cut(s)	548
ApeKI	GCWGC	2 cut(s)	71, 143
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AspS9I	GGNCC	2 cut(s)	98, 407
AsuHPI	GGTGA	3 cut(s)	70, 225, 343
AvaII	GGWCC	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	83, 130
BccI	CCATC	2 cut(s)	580, 672
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	448, 636
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	72, 144
BlsI	GCNGC	2 cut(s)	73, 145
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	98, 407
BmiI	GGNNCC	1 cut(s)	591
BmrI	ACTGGG	2 cut(s)	198, 285
BmsI	GCATC	1 cut(s)	646
BmuI	ACTGGG	2 cut(s)	198, 285
Bsc4I	CCNNNNNNNGG	5 cut(s)	186, 282, 457, 539, 566
Bse1I	ACTGG	3 cut(s)	132, 204, 291
BseGI	GGATG	3 cut(s)	367, 520, 591
BseLI	CCNNNNNNNGG	5 cut(s)	186, 282, 457, 539, 566
BseMII	CTCAG	2 cut(s)	478, 486
BseNI	ACTGG	3 cut(s)	132, 204, 291
BseRI	GAGGAG	3 cut(s)	45, 54, 220
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	2 cut(s)	83, 130
BseYI	CCCAGC	3 cut(s)	539, 553, 566
BshFI	GGCC	2 cut(s)	99, 298
BsiHKAI	GWGCWC	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	5 cut(s)	186, 282, 457, 539, 566
BsmAI	GTCTC	2 cut(s)	448, 636
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	99, 298
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	2 cut(s)	27, 171
BspANI	GGCC	2 cut(s)	99, 298
BspCNI	CTCAG	2 cut(s)	477, 487
BspLI	GGNNCC	1 cut(s)	591
BsrI	ACTGG	3 cut(s)	132, 204, 291
BssMI	GATC	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	337, 638
BstDEI	CTNAG	2 cut(s)	464, 495
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	367, 520, 591
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	2 cut(s)	448, 636
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 563
BstNSI	RCATGY	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	83, 130
BsuRI	GGCC	2 cut(s)	99, 298
BtsCI	GGATG	3 cut(s)	367, 520, 591
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	98, 407
CviAII	CATG	5 cut(s)	22, 49, 255, 380, 425
CviJI	RGCY	8 cut(s)	59, 99, 202, 272, 298, 373, 566, 592
CviKI_1	RGCY	8 cut(s)	59, 99, 202, 272, 298, 373, 566, 592
DdeI	CTNAG	2 cut(s)	464, 495
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
EciI	GGCGGA	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	546
EcoNI	CCTNNNNNAGG	1 cut(s)	455
FaeI	CATG	5 cut(s)	25, 52, 258, 383, 428
FaiI	YATR	6 cut(s)	23, 50, 256, 381, 426, 654
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	21, 48, 254, 379, 424
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	72, 144
FokI	GGATG	3 cut(s)	374, 527, 598
Fsp4HI	GCNGC	2 cut(s)	72, 144
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	2 cut(s)	72, 144
GsaI	CCCAGC	3 cut(s)	543, 557, 570
HaeIII	GGCC	2 cut(s)	99, 298
Hin1II	CATG	5 cut(s)	25, 52, 258, 383, 428
HinfI	GANTC	1 cut(s)	497
HphI	GGTGA	3 cut(s)	70, 225, 343
Hpy166II	GTNNAC	2 cut(s)	433, 550
Hpy188I	TCNGA	3 cut(s)	496, 502, 574
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	433, 550
HpyAV	CCTTC	6 cut(s)	309, 426, 461, 543, 570, 603
HpyCH4III	ACNGT	2 cut(s)	337, 638
HpyCH4V	TGCA	5 cut(s)	258, 550, 628, 673, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 563
HpyF3I	CTNAG	2 cut(s)	464, 495
Hsp92II	CATG	5 cut(s)	25, 52, 258, 383, 428
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	1 cut(s)	517
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	2 cut(s)	83, 130
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	76, 331
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	5 cut(s)	114, 117, 120, 201, 294
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	5 cut(s)	105, 277, 522, 575, 613
MlyI	GAGTC	1 cut(s)	506
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	446, 563
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	5 cut(s)	25, 52, 258, 383, 428
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	76, 331
NspI	RCATGY	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	73, 145
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PspFI	CCCAGC	3 cut(s)	539, 553, 566
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	2 cut(s)	98, 407
PvuII	CAGCTG	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	72, 144
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	2 cut(s)	98, 407
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	7 cut(s)	37, 179, 222, 412, 462, 562, 568
SfaNI	GCATC	1 cut(s)	646
SinI	GGWCC	1 cut(s)	407
Sse9I	AATT	5 cut(s)	105, 277, 522, 575, 613
SsiI	CCGC	2 cut(s)	27, 171
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	337, 638
TasI	AATT	5 cut(s)	105, 277, 522, 575, 613
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	76, 331
TseI	GCWGC	2 cut(s)	71, 143
Tsp45I	GTSAC	2 cut(s)	76, 331
TspDTI	ATGAA	2 cut(s)	441, 463
TspRI	CASTG	1 cut(s)	361
VneI	GTGCAC	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	407
XagI	CCTNNNNNAGG	1 cut(s)	455
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.