RLG00000026765

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002211
Physical Location & Seq
Forward (+)
5725675 .. 5727604
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026765

Sequence Viewer

Length: 1032 bp
ATGATGTTCGGCGGCAGAAGCATGGGCGGCGGCGGCGGAGGAAGTATGTTCCGTACAGTCAGCAGGGCGGCGCTGACTAGAACCACCGGTGTTGCAATCCCAGAACCCATCACTTCTTCGAGTTCTAACACCAACACAACCACCACGACTGCTACTAGTCCTTCGGCTTCTAGGAATACCCAGAAACCCGGTTCGGTTAGTAACCTCTGTCTCTCTTCTCCTACCTCTCCGAATTGTGGGTCCGTTTCTGCGAGTTCCGGCGGGCCCAACTGGCCCACTTCGCCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACGGGTGTTCACTCCGACTCATCATCACCCCCAGTTCATCCGGGATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGGTGCAGCAAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTCTGCTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGACGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATGGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGAGAGCTCAGGGAATCCTTCTATGCAGCTGAAGACAATAGTTCCCAGAGTTCATCTGAGGATTCTGATGATAACAGTACAGCAACAAACTTTTTGAGGTGGATCTTTCAAAATACCTATGGAAAGGTAATGGAGGTAATAGAGAACATTACCAAGCTTTTTGATCACTTGCTTCAACCTCAAGGCAGTGGCAAGACGAAGGCTGAAGCTGGTAATCTGTTTGAGGAGAGGCTGAGAACATCGGTCATGCTCTCTGTCGTGGTCCTCTTGGTTGTGGTGGTTACTCGAACCCACAGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

37.02

Weight (kDa)

4.82

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 12, 27, 30, 33, 36, 68, 261
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 780, 954
AfaI GTAC 3 cut(s) 55, 482, 808
AfeI AGCGCT 1 cut(s) 1027
AfiI CCNNNNNNNGG 2 cut(s) 236, 604
AgeI ACCGGT 1 cut(s) 86
AgsI TTSAA 3 cut(s) 419, 839, 905
AhlI ACTAGT 1 cut(s) 155
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 6 cut(s) 341, 500, 736, 758, 886, 938
AluI AGCT 6 cut(s) 341, 500, 736, 758, 886, 938
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 839
Aor51HI AGCGCT 1 cut(s) 1027
AoxI GGCC 2 cut(s) 263, 272
ApaI GGGCCC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 532, 755
ApoI RAATTY 1 cut(s) 467
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AsiGI ACCGGT 1 cut(s) 86
AspLEI GCGC 2 cut(s) 73, 1028
AspS9I GGNCC 6 cut(s) 240, 263, 264, 273, 371, 991
AsuC2I CCSGG 2 cut(s) 189, 461
AsuHPI GGTGA 2 cut(s) 437, 739
AvaII GGWCC 3 cut(s) 240, 371, 991
AxyI CCTNAGG 1 cut(s) 603
BaeGI GKGCMC 1 cut(s) 267
BanII GRGCYC 2 cut(s) 267, 738
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 2 cut(s) 544, 767
BccI CCATC 2 cut(s) 116, 562
BclI TGATCA 2 cut(s) 502, 892
BcnI CCSGG 2 cut(s) 189, 461
BcoDI GTCTC 1 cut(s) 215
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 3 cut(s) 78, 156, 171
BfoI RGCGCY 2 cut(s) 74, 1029
BglI GCCNNNNNGGC 1 cut(s) 271
BisI GCNGC 7 cut(s) 13, 28, 31, 34, 69, 533, 756
BlsI GCNGC 7 cut(s) 14, 29, 32, 35, 70, 534, 757
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 2 cut(s) 189, 461
Bme18I GGWCC 3 cut(s) 240, 371, 991
BmgT120I GGNCC 6 cut(s) 240, 263, 264, 273, 371, 991
BmiI GGNNCC 4 cut(s) 241, 265, 475, 573
BmrFI CCNGG 2 cut(s) 189, 461
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 894
BpuMI CCSGG 2 cut(s) 189, 461
BsaWI WCCGGW 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 604
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 275, 451
Bse21I CCTNAGG 1 cut(s) 603
BseGI GGATG 5 cut(s) 456, 499, 573, 614, 709
BseLI CCNNNNNNNGG 2 cut(s) 236, 604
BseMII CTCAG 5 cut(s) 299, 617, 751, 777, 953
BseNI ACTGG 2 cut(s) 275, 451
BseRI GAGGAG 1 cut(s) 968
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 2 cut(s) 544, 767
BseYI CCCAGC 1 cut(s) 597
BsgI GTGCAG 1 cut(s) 551
BshFI GGCC 2 cut(s) 265, 274
BshTI ACCGGT 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 4 cut(s) 87, 189, 258, 460
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 236, 604
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 2 cut(s) 265, 274
Bsp120I GGGCCC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 267, 738
Bsp143I GATC 3 cut(s) 502, 831, 892
BspACI CCGC 7 cut(s) 12, 27, 30, 33, 36, 68, 261
BspANI GGCC 2 cut(s) 265, 274
BspCNI CTCAG 5 cut(s) 298, 616, 750, 778, 954
BspLI GGNNCC 4 cut(s) 241, 265, 475, 573
BspPI GGATC 1 cut(s) 839
BspQI GCTCTTC 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 2 cut(s) 275, 451
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 3 cut(s) 502, 831, 892
Bst4CI ACNGT 2 cut(s) 58, 806
Bst6I CTCTTC 2 cut(s) 220, 420
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 5 cut(s) 285, 603, 737, 786, 962
BstF5I GGATG 5 cut(s) 456, 499, 573, 614, 709
BstH2I RGCGCY 2 cut(s) 74, 1029
BstHHI GCGC 2 cut(s) 73, 1028
BstKTI GATC 3 cut(s) 505, 834, 895
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 3 cut(s) 502, 831, 892
BstMWI GCNNNNNNNGC 6 cut(s) 18, 27, 33, 271, 280, 410
BstSCI CCNGG 2 cut(s) 187, 459
BstSLI GKGCMC 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 544, 767
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 831
BstYI RGATCY 1 cut(s) 831
Bsu36I CCTNAGG 1 cut(s) 603
BsuRI GGCC 2 cut(s) 265, 274
BtsCI GGATG 5 cut(s) 456, 499, 573, 614, 709
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 1 cut(s) 922
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 2 cut(s) 73, 1028
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 6 cut(s) 240, 263, 264, 273, 371, 991
CseI GACGC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 54, 481, 807
CspAI ACCGGT 1 cut(s) 86
CspCI CAANNNNNGTGG 3 cut(s) 73, 108, 1010
CviAII CATG 3 cut(s) 22, 344, 976
CviQI GTAC 3 cut(s) 54, 481, 807
DdeI CTNAG 5 cut(s) 285, 603, 737, 786, 962
DpnI GATC 3 cut(s) 504, 833, 894
DpnII GATC 3 cut(s) 502, 831, 892
Eam1104I CTCTTC 2 cut(s) 220, 420
EarI CTCTTC 2 cut(s) 220, 420
EciI GGCGGA 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 736
Eco24I GRGCYC 2 cut(s) 267, 738
Eco47I GGWCC 3 cut(s) 240, 371, 991
Eco47III AGCGCT 1 cut(s) 1027
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 2 cut(s) 780, 954
Eco81I CCTNAGG 1 cut(s) 603
EcoICRI GAGCTC 1 cut(s) 736
EcoT38I GRGCYC 2 cut(s) 267, 738
FaeI CATG 3 cut(s) 25, 347, 979
FaiI YATR 7 cut(s) 23, 47, 345, 624, 753, 849, 977
FaqI GGGAC 1 cut(s) 565
FatI CATG 3 cut(s) 21, 343, 975
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 2 cut(s) 502, 892
Fnu4HI GCNGC 7 cut(s) 13, 28, 31, 34, 69, 533, 756
FokI GGATG 5 cut(s) 443, 506, 580, 621, 716
FriOI GRGCYC 2 cut(s) 267, 738
Fsp4HI GCNGC 7 cut(s) 13, 28, 31, 34, 69, 533, 756
FspBI CTAG 3 cut(s) 78, 156, 171
GlaI GCGC 2 cut(s) 72, 1027
GluI GCNGC 7 cut(s) 13, 28, 31, 34, 69, 533, 756
GsaI CCCAGC 1 cut(s) 601
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 74, 1029
HaeIII GGCC 2 cut(s) 265, 274
HapII CCGG 4 cut(s) 87, 189, 258, 460
HgaI GACGC 1 cut(s) 635
HhaI GCGC 2 cut(s) 73, 1028
Hin1II CATG 3 cut(s) 25, 347, 979
Hin6I GCGC 2 cut(s) 71, 1026
HinP1I GCGC 2 cut(s) 71, 1026
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 5 cut(s) 436, 557, 650, 743, 791
HpaII CCGG 4 cut(s) 87, 189, 258, 460
HphI GGTGA 2 cut(s) 437, 739
Hpy166II GTNNAC 3 cut(s) 316, 397, 429
Hpy188I TCNGA 9 cut(s) 231, 435, 478, 507, 562, 663, 688, 787, 796
Hpy188III TCNNGA 2 cut(s) 353, 384
Hpy8I GTNNAC 3 cut(s) 316, 397, 429
HpyAV CCTTC 5 cut(s) 171, 390, 585, 757, 922
HpyCH4III ACNGT 2 cut(s) 58, 806
HpyCH4V TGCA 4 cut(s) 95, 532, 643, 755
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 27, 33, 271, 280, 410
HpyF3I CTNAG 5 cut(s) 285, 603, 737, 786, 962
Hsp92II CATG 3 cut(s) 25, 347, 979
HspAI GCGC 2 cut(s) 71, 1026
Ksp22I TGATCA 2 cut(s) 502, 892
Kzo9I GATC 3 cut(s) 502, 831, 892
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 2 cut(s) 544, 767
LweI GCATC 1 cut(s) 694
MaeI CTAG 3 cut(s) 78, 156, 171
MaeIII GTNAC 2 cut(s) 200, 1009
MalI GATC 3 cut(s) 504, 833, 894
MboI GATC 3 cut(s) 502, 831, 892
MboII GAAGA 6 cut(s) 108, 207, 338, 407, 534, 773
MflI RGATCY 1 cut(s) 831
MhlI GDGCHC 2 cut(s) 267, 738
MluCI AATT 3 cut(s) 232, 467, 592
MlyI GAGTC 2 cut(s) 430, 659
MmeI TCCRAC 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 4 cut(s) 87, 189, 258, 460
MspR9I CCNGG 2 cut(s) 189, 461
MwoI GCNNNNNNNGC 6 cut(s) 18, 27, 33, 271, 280, 410
NciI CCSGG 2 cut(s) 189, 461
NdeII GATC 3 cut(s) 502, 831, 892
NlaIII CATG 3 cut(s) 25, 347, 979
NlaIV GGNNCC 4 cut(s) 241, 265, 475, 573
PciSI GCTCTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 557, 743, 791
PfoI TCCNGGA 1 cut(s) 459
PinAI ACCGGT 1 cut(s) 86
PkrI GCNGC 7 cut(s) 14, 29, 32, 35, 70, 534, 757
PleI GAGTC 2 cut(s) 430, 658
PpsI GAGTC 2 cut(s) 430, 658
Psp124BI GAGCTC 1 cut(s) 738
PspFI CCCAGC 1 cut(s) 597
PspN4I GGNNCC 4 cut(s) 241, 265, 475, 573
PspOMI GGGCCC 1 cut(s) 263
PspPI GGNCC 6 cut(s) 240, 263, 264, 273, 371, 991
PsuI RGATCY 1 cut(s) 831
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 3 cut(s) 55, 482, 808
RsaNI GTAC 3 cut(s) 54, 481, 807
SacI GAGCTC 1 cut(s) 738
SapI GCTCTTC 1 cut(s) 420
SatI GCNGC 7 cut(s) 13, 28, 31, 34, 69, 533, 756
Sau3AI GATC 3 cut(s) 502, 831, 892
Sau96I GGNCC 6 cut(s) 240, 263, 264, 273, 371, 991
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 2 cut(s) 430, 659
ScrFI CCNGG 2 cut(s) 189, 461
SduI GDGCHC 2 cut(s) 267, 738
SfaNI GCATC 1 cut(s) 694
SfiI GGCCNNNNNGGCC 1 cut(s) 271
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 3 cut(s) 240, 371, 991
SmlI CTYRAG 1 cut(s) 909
SmoI CTYRAG 1 cut(s) 909
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 3 cut(s) 232, 467, 592
SsiI CCGC 7 cut(s) 12, 27, 30, 33, 36, 68, 261
SspMI CTAG 3 cut(s) 78, 156, 171
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 2 cut(s) 187, 459
TaaI ACNGT 2 cut(s) 58, 806
TaqI TCGA 3 cut(s) 119, 300, 1015
TaqII GACCGA 1 cut(s) 961
TasI AATT 3 cut(s) 232, 467, 592
TatI WGTACW 2 cut(s) 480, 806
TauI GCSGC 5 cut(s) 15, 30, 33, 36, 71
TfiI GAWTC 3 cut(s) 557, 743, 791
TscAI CASTG 1 cut(s) 922
TseI GCWGC 2 cut(s) 532, 755
TspDTI ATGAA 6 cut(s) 405, 445, 534, 666, 728, 771
TspGWI ACGGA 2 cut(s) 41, 232
TspRI CASTG 1 cut(s) 922
VpaK11BI GGWCC 3 cut(s) 240, 371, 991
XapI RAATTY 1 cut(s) 467
XspI CTAG 3 cut(s) 78, 156, 171
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.