Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000322.1

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

12138 .. 16310

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000322.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgatggaggaaagagtcttccagatccactttctctctcctccatctctctctctcgtttgtgattgtttctctgctcgaagccgccttgctctccgttcgctctttaatcctttccacagtgagagcatttccttccaacatcaagtcaactcattccaacaccctcgttttcaagaggaggctttcggttctggtgggtccaactggcccactccacctcagtttgatgatttcgattgggtttctgtggacgggagtgaagatgttgagaaagctcataggtttcttgatgacattgttcttggacctgttccttctggagatgaagttcacaacgctgtttctgctcttcaacaggtgttcagtccaactcatcacccccagtttatctgttataaatttggttccaagtacttggacaaggatgtagctgatctgattttgagtacttctggttcggtgcagcgagtatcttcatttgggacagaatcagattggatagagccttctgtttacctttgtaagtcccagcctcagggacgtcaaagaatcagattggagggtcatcttggttttggttttaaagaattgaatttggctttcattatgttagataagaaattagttgtgggagagttcgaacatggagaggcccatgcggaaggattagcccctacaccattcacaatggtgcaccggggttgccaaacaacaaacccgcgccgccgtggaggagaatcggcgctagagaacaccagagggacgaccagacggcggagcagatcctgtccggaaagtttcgtcgccggaggtggccggagctcgtcggaaaagtcgggtcggaatgctgggttcgggtcgggtcagtcgaaaatcttcgactctgagggcgcggacgagagagaagagagagagggaatggtttccggaaatggaattgaggaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.19

Weight (kDa)

5.76

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AatII	GACGTC	1 cut(s)	547
AccII	CGCG	2 cut(s)	724, 896
AccIII	TCCGGA	2 cut(s)	793, 929
AciI	CCGC	6 cut(s)	85, 662, 722, 727, 778, 896
AclWI	GGATC	2 cut(s)	19, 780
AcoI	YGGCCR	1 cut(s)	817
AcsI	RAATTY	2 cut(s)	401, 595
AcyI	GRCGYC	1 cut(s)	544
AfaI	GTAC	2 cut(s)	416, 451
AfiI	CCNNNNNNNGG	2 cut(s)	538, 777
AgsI	TTSAA	3 cut(s)	176, 356, 595
AleI	CACNNNNGTG	1 cut(s)	692
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	3 cut(s)	278, 434, 825
AluI	AGCT	3 cut(s)	278, 434, 825
Alw21I	GWGCWC	2 cut(s)	699, 827
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	19, 780
AlwNI	CAGNNNCTG	1 cut(s)	789
Aor13HI	TCCGGA	2 cut(s)	793, 929
AoxI	GGCC	3 cut(s)	209, 654, 817
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	2 cut(s)	401, 595
Asp700I	GAANNNNTTC	2 cut(s)	878, 925
AspLEI	GCGC	3 cut(s)	726, 748, 896
AspS9I	GGNCC	4 cut(s)	201, 210, 308, 655
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	642
AvaII	GGWCC	2 cut(s)	201, 308
AxyI	CCTNAGG	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	699
BanII	GRGCYC	1 cut(s)	827
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	699, 827
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	2 cut(s)	714, 791
BcnI	CCSGG	1 cut(s)	701
BfaI	CTAG	1 cut(s)	749
BfoI	RGCGCY	1 cut(s)	749
BisI	GCNGC	3 cut(s)	85, 467, 727
BlsI	GCNGC	3 cut(s)	86, 468, 728
BmcAI	AGTACT	2 cut(s)	416, 451
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	2 cut(s)	201, 308
BmgT120I	GGNCC	4 cut(s)	201, 210, 308, 655
BmiI	GGNNCC	2 cut(s)	202, 409
BmrFI	CCNGG	1 cut(s)	701
BmrI	ACTGGG	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	700, 730
BsaWI	WCCGGW	2 cut(s)	793, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 777
Bse1I	ACTGG	2 cut(s)	212, 385
Bse21I	CCTNAGG	1 cut(s)	537
BseAI	TCCGGA	2 cut(s)	793, 929
BseDI	CCNNGG	2 cut(s)	700, 730
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	2 cut(s)	538, 777
BseMII	CTCAG	3 cut(s)	236, 551, 879
BseNI	ACTGG	2 cut(s)	212, 385
BseRI	GAGGAG	3 cut(s)	30, 194, 750
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	2 cut(s)	531, 851
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	2 cut(s)	724, 896
BshFI	GGCC	3 cut(s)	211, 656, 819
BsiHKAI	GWGCWC	2 cut(s)	699, 827
BsiSI	CCGG	5 cut(s)	700, 794, 810, 820, 930
BslFI	GGGAC	4 cut(s)	499, 514, 555, 778
BslI	CCNNNNNNNGG	2 cut(s)	538, 777
BsmFI	GGGAC	4 cut(s)	499, 514, 555, 778
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	3 cut(s)	211, 656, 819
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	2 cut(s)	699, 827
Bsp13I	TCCGGA	2 cut(s)	793, 929
Bsp143I	GATC	3 cut(s)	24, 436, 785
BspACI	CCGC	6 cut(s)	85, 662, 722, 727, 778, 896
BspANI	GGCC	3 cut(s)	211, 656, 819
BspCNI	CTCAG	3 cut(s)	235, 550, 880
BspEI	TCCGGA	2 cut(s)	793, 929
BspFNI	CGCG	2 cut(s)	724, 896
BspLI	GGNNCC	2 cut(s)	202, 409
BspPI	GGATC	2 cut(s)	19, 780
BspQI	GCTCTTC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	212, 385
BssECI	CCNNGG	2 cut(s)	700, 730
BssMI	GATC	3 cut(s)	24, 436, 785
BssNI	GRCGYC	1 cut(s)	544
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	357, 903
BstACI	GRCGYC	1 cut(s)	544
BstBI	TTCGAA	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	222, 537, 888
BstDSI	CCRYGG	1 cut(s)	730
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	2 cut(s)	724, 896
BstH2I	RGCGCY	1 cut(s)	749
BstHHI	GCGC	3 cut(s)	726, 748, 896
BstKTI	GATC	3 cut(s)	27, 439, 788
BstMBI	GATC	3 cut(s)	24, 436, 785
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	2 cut(s)	724, 896
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	2 cut(s)	24, 785
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	2 cut(s)	24, 785
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	211, 656, 819
BtgI	CCRYGG	1 cut(s)	730
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	789
CfoI	GCGC	3 cut(s)	726, 748, 896
Cfr13I	GGNCC	4 cut(s)	201, 210, 308, 655
Csp6I	GTAC	2 cut(s)	415, 450
CviAII	CATG	2 cut(s)	647, 659
CviQI	GTAC	2 cut(s)	415, 450
DdeI	CTNAG	3 cut(s)	222, 537, 888
DpnI	GATC	3 cut(s)	26, 438, 787
DpnII	GATC	3 cut(s)	24, 436, 785
DraI	TTTAAA	1 cut(s)	586
EaeI	YGGCCR	1 cut(s)	817
Eam1104I	CTCTTC	2 cut(s)	357, 903
EarI	CTCTTC	2 cut(s)	357, 903
EciI	GGCGGA	1 cut(s)	793
Ecl136II	GAGCTC	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	827
Eco47I	GGWCC	2 cut(s)	201, 308
Eco53kI	GAGCTC	1 cut(s)	825
Eco81I	CCTNAGG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	827
FaeI	CATG	2 cut(s)	650, 662
FaiI	YATR	5 cut(s)	282, 399, 611, 648, 660
FaqI	GGGAC	4 cut(s)	499, 514, 555, 778
FatI	CATG	2 cut(s)	646, 658
FauI	CCCGC	1 cut(s)	729
Fnu4HI	GCNGC	3 cut(s)	85, 467, 727
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	3 cut(s)	85, 467, 727
FspBI	CTAG	1 cut(s)	749
GlaI	GCGC	3 cut(s)	725, 747, 895
GluI	GCNGC	3 cut(s)	85, 467, 727
GsaI	CCCAGC	2 cut(s)	535, 855
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	749
HaeIII	GGCC	3 cut(s)	211, 656, 819
HapII	CCGG	5 cut(s)	700, 794, 810, 820, 930
HhaI	GCGC	3 cut(s)	726, 748, 896
Hin1I	GRCGYC	1 cut(s)	544
Hin1II	CATG	2 cut(s)	650, 662
Hin6I	GCGC	3 cut(s)	724, 746, 894
HinP1I	GCGC	3 cut(s)	724, 746, 894
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	5 cut(s)	15, 491, 552, 740, 884
HpaII	CCGG	5 cut(s)	700, 794, 810, 820, 930
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	5 cut(s)	151, 253, 334, 517, 697
Hpy188I	TCNGA	6 cut(s)	441, 496, 557, 832, 846, 889
Hpy188III	TCNNGA	6 cut(s)	22, 176, 290, 321, 794, 930
Hpy8I	GTNNAC	5 cut(s)	151, 253, 334, 517, 697
Hpy99I	CGWCG	2 cut(s)	809, 832
HpyAV	CCTTC	4 cut(s)	145, 327, 519, 659
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	2 cut(s)	466, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	3 cut(s)	222, 537, 888
HpySE526I	ACGT	1 cut(s)	544
Hsp92I	GRCGYC	1 cut(s)	544
Hsp92II	CATG	2 cut(s)	650, 662
HspAI	GCGC	3 cut(s)	724, 746, 894
Kpn2I	TCCGGA	2 cut(s)	793, 929
Kzo9I	GATC	3 cut(s)	24, 436, 785
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	780, 822
Lsp1109I	GCAGC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	749
MaeII	ACGT	1 cut(s)	544
MalI	GATC	3 cut(s)	26, 438, 787
MboI	GATC	3 cut(s)	24, 436, 785
MboII	GAAGA	6 cut(s)	10, 275, 344, 468, 871, 920
MflI	RGATCY	2 cut(s)	24, 785
MhlI	GDGCHC	2 cut(s)	699, 827
MluCI	AATT	5 cut(s)	401, 590, 595, 623, 939
MlyI	GAGTC	2 cut(s)	24, 878
MmeI	TCCRAC	6 cut(s)	163, 184, 228, 395, 810, 824
MroI	TCCGGA	2 cut(s)	793, 929
MroXI	GAANNNNTTC	2 cut(s)	878, 925
MseI	TTAA	2 cut(s)	108, 585
MslI	CAYNNNNRTG	1 cut(s)	692
MspI	CCGG	5 cut(s)	700, 794, 810, 820, 930
MspR9I	CCNGG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	853
MvnI	CGCG	2 cut(s)	724, 896
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	3 cut(s)	24, 436, 785
NlaIII	CATG	2 cut(s)	650, 662
NlaIV	GGNNCC	2 cut(s)	202, 409
NspV	TTCGAA	1 cut(s)	642
OliI	CACNNNNGTG	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	869
PctI	GAATGC	1 cut(s)	853
PdmI	GAANNNNTTC	2 cut(s)	878, 925
PfeI	GAWTC	3 cut(s)	491, 552, 740
PkrI	GCNGC	3 cut(s)	86, 468, 728
PleI	GAGTC	2 cut(s)	23, 878
PpsI	GAGTC	2 cut(s)	23, 878
PsiI	TTATAA	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	827
PspFI	CCCAGC	2 cut(s)	531, 851
PspN4I	GGNNCC	2 cut(s)	202, 409
PspPI	GGNCC	4 cut(s)	201, 210, 308, 655
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
PstNI	CAGNNNCTG	1 cut(s)	789
PsuI	RGATCY	2 cut(s)	24, 785
RsaI	GTAC	2 cut(s)	416, 451
RsaNI	GTAC	2 cut(s)	415, 450
RseI	CAYNNNNRTG	1 cut(s)	692
SacI	GAGCTC	1 cut(s)	827
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	108, 585
SatI	GCNGC	3 cut(s)	85, 467, 727
Sau3AI	GATC	3 cut(s)	24, 436, 785
Sau96I	GGNCC	4 cut(s)	201, 210, 308, 655
ScaI	AGTACT	2 cut(s)	416, 451
SchI	GAGTC	2 cut(s)	24, 878
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	2 cut(s)	699, 827
SfuI	TTCGAA	1 cut(s)	642
SinI	GGWCC	2 cut(s)	201, 308
SmiMI	CAYNNNNRTG	1 cut(s)	692
Sse9I	AATT	5 cut(s)	401, 590, 595, 623, 939
SsiI	CCGC	6 cut(s)	85, 662, 722, 727, 778, 896
SspMI	CTAG	1 cut(s)	749
SstI	GAGCTC	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	699
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	5 cut(s)	79, 237, 642, 872, 882
TasI	AATT	5 cut(s)	401, 590, 595, 623, 939
TatI	WGTACW	2 cut(s)	414, 449
TauI	GCSGC	2 cut(s)	87, 729
TfiI	GAWTC	3 cut(s)	491, 552, 740
Tru1I	TTAA	2 cut(s)	108, 585
Tru9I	TTAA	2 cut(s)	108, 585
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	342, 468, 595
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	201, 308
XapI	RAATTY	2 cut(s)	401, 595
XmnI	GAANNNNTTC	2 cut(s)	878, 925
XspI	CTAG	1 cut(s)	749
ZraI	GACGTC	1 cut(s)	545
ZrmI	AGTACT	2 cut(s)	416, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.