Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

28040972 .. 28043461

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1181500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGATGTTTGGTGGAAGAAGCATGGGCGGAGGAGGTGGAGGAGGAAGCGTGTTTAGGACTGTGAGTAGGGCAGCAGTCACCAGAACTGTTGCTGGTGGCCCACCAATTCAAGAACCCCTTTCTTCTTCTTCCAGTTCTCCTGCTACTGCGAATACCACCACCACCACTTCCACTTCTAGGCACACCCAGAAGCCCAGTTCTTCCCACAACCTCTCTCTCTCCTCACCCACCTCACCTTTTGCCTCGTGCAATAATCCTCTGGCTTCCAATTGTGGCACACCCGGCTGGCCTTCTTCCCCTCGCCTTGATGATTTTGATTGGGTGACTGTGGATAATGGCATTAGCAGTGAGGATGATGAGAGAGTTTCACATGGGTTTCTTGATGATTTTGTTCTTGGACCTGTTCCTTCCAAGGATGAAGTTCACAGTGCTGTCTCTGCCCTTCAACAGGTTATCAGTCCCTTCATCAGGGATAAGTTTGGTTCTGAGTCAGACAGAGCTGTGGATGATCAAATTACTAGTGCTTCTGCTGGGTTTGTGCACCCAGCATCTTCAGCTGGGTCAGAATTAGATTGGATGGAGCCTTCTGCCAATCTTTCTAATAATTCAAAGATGTTGCAGTCCTATGGTTCTGAAAGAGTTTATGATGCTTTCCATCTCTTGCAGACCGAGACTTCTGTGCAGAGAATGGTGATCTCATTGTCATCTGATAGAGCAGTTTGGGATGCGGTGATGAACAACGAGGTGGTGCGGGAGCTCCGGGAATCCTTCTATGCAGATGAAGACAATAAATCCGAGAGTCCAGATGAGAATTCTGATGATAACGATAAAGCAACAAACATTGTCAAGTGGATCTTTCAAAACACCATGGCAAAAGTCATGGAAGCAGTCGAGAAAATTACAAAGATCATGGGCGACTTATTTCAACCTCCAAGCAGGGAAAACGCGAAAGCAGAACCCAGCAATCGCTTTGAGGACAGGCTGAAAAAATCGTTCATGCTCTCCGTTGTGGTCCTGTTGATTGTGGTGGTTACTCGAACCCACAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

37.89

Weight (kDa)

5.02

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	947
AciI	CCGC	3 cut(s)	27, 728, 751
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	537
AfiI	CCNNNNNNNGG	3 cut(s)	177, 448, 468
AgsI	TTSAA	5 cut(s)	110, 446, 609, 860, 926
AhlI	ACTAGT	1 cut(s)	518
AluBI	AGCT	3 cut(s)	500, 557, 757
AluI	AGCT	3 cut(s)	500, 557, 757
Alw21I	GWGCWC	2 cut(s)	543, 759
Alw26I	GTCTC	2 cut(s)	439, 665
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	3 cut(s)	97, 287, 1047
ApaLI	GTGCAC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	811
AspS9I	GGNCC	3 cut(s)	98, 398, 1012
AsuC2I	CCSGG	2 cut(s)	282, 761
AsuHPI	GGTGA	6 cut(s)	70, 216, 225, 334, 703, 742
AvaII	GGWCC	2 cut(s)	398, 1012
BaeGI	GKGCMC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	759
BauI	CACGAG	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	2 cut(s)	543, 759
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	2 cut(s)	571, 663
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	2 cut(s)	282, 761
BcoDI	GTCTC	2 cut(s)	439, 665
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	2 cut(s)	177, 519
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	282, 761
Bme18I	GGWCC	2 cut(s)	398, 1012
BmgT120I	GGNCC	3 cut(s)	98, 398, 1012
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	282, 761
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	3 cut(s)	557, 637, 715
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	789
BpuMI	CCSGG	2 cut(s)	282, 761
BsaJI	CCNNGG	2 cut(s)	411, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 448, 468
Bse1I	ACTGG	2 cut(s)	132, 195
BseDI	CCNNGG	2 cut(s)	411, 867
BseGI	GGATG	5 cut(s)	358, 421, 511, 582, 730
BseLI	CCNNNNNNNGG	3 cut(s)	177, 448, 468
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	132, 195
BseRI	GAGGAG	3 cut(s)	45, 54, 211
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	4 cut(s)	530, 544, 557, 959
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	1 cut(s)	947
BshFI	GGCC	3 cut(s)	99, 289, 1049
BsiHKAI	GWGCWC	2 cut(s)	543, 759
BsiSI	CCGG	2 cut(s)	282, 760
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	177, 448, 468
BsmAI	GTCTC	2 cut(s)	439, 665
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	99, 289, 1049
Bsp1286I	GDGCHC	2 cut(s)	543, 759
Bsp143I	GATC	4 cut(s)	508, 693, 852, 906
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	3 cut(s)	27, 728, 751
BspANI	GGCC	3 cut(s)	99, 289, 1049
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	947
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	132, 195
BssECI	CCNNGG	2 cut(s)	411, 867
BssMI	GATC	4 cut(s)	508, 693, 852, 906
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	411, 867
Bst2BI	CACGAG	1 cut(s)	244
Bst4CI	ACNGT	4 cut(s)	61, 88, 328, 428
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	1 cut(s)	867
BstENI	CCTNNNNNAGG	2 cut(s)	446, 466
BstF5I	GGATG	5 cut(s)	358, 421, 511, 582, 730
BstFNI	CGCG	1 cut(s)	947
BstKTI	GATC	4 cut(s)	511, 696, 855, 909
BstMAI	GTCTC	2 cut(s)	439, 665
BstMBI	GATC	4 cut(s)	508, 693, 852, 906
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 437, 554
BstSCI	CCNGG	2 cut(s)	280, 759
BstSLI	GKGCMC	1 cut(s)	543
BstUI	CGCG	1 cut(s)	947
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	99, 289, 1049
BtgI	CCRYGG	1 cut(s)	867
BtsCI	GGATG	5 cut(s)	358, 421, 511, 582, 730
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	352, 433
Cac8I	GCNNGC	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	98, 398, 1012
CviAII	CATG	6 cut(s)	22, 371, 868, 880, 910, 997
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	4 cut(s)	510, 695, 854, 908
DpnII	GATC	4 cut(s)	508, 693, 852, 906
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	411, 867
Eco147I	AGGCCT	1 cut(s)	1049
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	2 cut(s)	398, 1012
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	757
EcoNI	CCTNNNNNAGG	2 cut(s)	446, 466
EcoRI	GAATTC	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	411, 867
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	2 cut(s)	411, 867
FaeI	CATG	6 cut(s)	25, 374, 871, 883, 913, 1000
FaiI	YATR	9 cut(s)	23, 372, 627, 645, 774, 869, 881, 911, 998
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 839, 871
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	6 cut(s)	21, 370, 867, 879, 909, 996
FauI	CCCGC	1 cut(s)	744
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	5 cut(s)	365, 428, 518, 589, 737
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	177, 519
GluI	GCNGC	1 cut(s)	72
GsaI	CCCAGC	4 cut(s)	534, 548, 561, 963
HaeIII	GGCC	3 cut(s)	99, 289, 1049
HapII	CCGG	2 cut(s)	282, 760
Hin1II	CATG	6 cut(s)	25, 374, 871, 883, 913, 1000
HinfI	GANTC	3 cut(s)	488, 764, 799
HpaII	CCGG	2 cut(s)	282, 760
HphI	GGTGA	6 cut(s)	70, 216, 225, 334, 703, 742
Hpy166II	GTNNAC	2 cut(s)	424, 541
Hpy188I	TCNGA	7 cut(s)	487, 493, 565, 634, 709, 796, 817
Hpy188III	TCNNGA	4 cut(s)	110, 380, 803, 892
Hpy8I	GTNNAC	2 cut(s)	424, 541
HpyAV	CCTTC	6 cut(s)	300, 417, 452, 472, 594, 778
HpyCH4III	ACNGT	4 cut(s)	61, 88, 328, 428
HpyCH4V	TGCA	6 cut(s)	249, 541, 619, 664, 682, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 437, 554
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	6 cut(s)	25, 374, 871, 883, 913, 1000
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	508, 693, 852, 906
LmnI	GCTCC	3 cut(s)	580, 754, 762
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	3 cut(s)	557, 637, 715
MaeI	CTAG	2 cut(s)	177, 519
MaeIII	GTNAC	3 cut(s)	76, 322, 1030
MalI	GATC	4 cut(s)	510, 695, 854, 908
MboI	GATC	4 cut(s)	508, 693, 852, 906
MboII	GAAGA	8 cut(s)	27, 114, 117, 120, 192, 285, 543, 794
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	1 cut(s)	852
MhlI	GDGCHC	2 cut(s)	543, 759
MluCI	AATT	7 cut(s)	105, 268, 513, 566, 604, 811, 897
MlyI	GAGTC	2 cut(s)	497, 808
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	282, 760
MspR9I	CCNGG	2 cut(s)	282, 761
MunI	CAATTG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	947
MwoI	GCNNNNNNNGC	3 cut(s)	282, 437, 554
NciI	CCSGG	2 cut(s)	282, 761
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	4 cut(s)	508, 693, 852, 906
NlaIII	CATG	6 cut(s)	25, 374, 871, 883, 913, 1000
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	76, 322
PceI	AGGCCT	1 cut(s)	1049
PfeI	GAWTC	1 cut(s)	764
PfoI	TCCNGGA	1 cut(s)	759
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	496, 807
PpsI	GAGTC	2 cut(s)	496, 807
Psp124BI	GAGCTC	1 cut(s)	759
PspFI	CCCAGC	4 cut(s)	530, 544, 557, 959
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	98, 398, 1012
PsuI	RGATCY	1 cut(s)	852
PvuII	CAGCTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	759
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	508, 693, 852, 906
Sau96I	GGNCC	3 cut(s)	98, 398, 1012
SchI	GAGTC	2 cut(s)	497, 808
ScrFI	CCNGG	2 cut(s)	282, 761
SduI	GDGCHC	2 cut(s)	543, 759
SfaNI	GCATC	3 cut(s)	557, 637, 715
SinI	GGWCC	2 cut(s)	398, 1012
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	7 cut(s)	105, 268, 513, 566, 604, 811, 897
SseBI	AGGCCT	1 cut(s)	1049
SsiI	CCGC	3 cut(s)	27, 728, 751
SspMI	CTAG	2 cut(s)	177, 519
SstI	GAGCTC	1 cut(s)	759
StuI	AGGCCT	1 cut(s)	1049
StyD4I	CCNGG	2 cut(s)	280, 759
StyI	CCWWGG	2 cut(s)	411, 867
TaaI	ACNGT	4 cut(s)	61, 88, 328, 428
TaqI	TCGA	2 cut(s)	891, 1036
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	7 cut(s)	105, 268, 513, 566, 604, 811, 897
TfiI	GAWTC	1 cut(s)	764
TscAI	CASTG	2 cut(s)	352, 433
TseFI	GTSAC	2 cut(s)	76, 322
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	2 cut(s)	76, 322
TspDTI	ATGAA	5 cut(s)	432, 454, 749, 795, 985
TspGWI	ACGGA	1 cut(s)	994
TspRI	CASTG	2 cut(s)	352, 433
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	398, 1012
XagI	CCTNNNNNAGG	2 cut(s)	446, 466
XapI	RAATTY	1 cut(s)	811
XspI	CTAG	2 cut(s)	177, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.