Rroxscaffold_7G00196900

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002211
Physical Location & Seq
Reverse (-)
40389757 .. 40391719
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196900.1

Sequence Viewer

Length: 624 bp
ATGGCGAGAGGCCGGGGTCCGGCGTCGGAGGAGGCGGAGGGGCGTTTTCCAGCCGGGGTGTTCAGTCCAACTCATCACCCCCAGTTTATCTGTTATAAATTTGGTTCCAAGTACTTGGACAAGGATGTAGCTGATCTGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTGGGACAGAATCAGATTGGATAGAGCCTTCTGTTTACCTTTATAAGAAATTAGTTGTGGGAGAGTTCGAACATGGAGAGGCCCATGTGGAAGTGTTCTGGGATTTGATAATGGTTTTGTTATCTGTGATTGCTGACCTATGTTTTTGGATGAAGCTTGCGTGGTCCTTCTGGATACCTACTCGCAACTTCTTTGGCAATCTCAAAGAAGCTGGAAATGATATTTTGATAATAGCTGTTAGTTTGGACAGTAGTTGTGCTTTTGCTTGTGATGGTGGTATTGTAATGTTTGTCTTATGGGTCTTGGTTTGTGCCCTGATCCTTACTAGGCTTAAGGAATACTCTGTAGATGAAGTGTTCTACATAAGAAAGTATTGGCTCAAGGGTGCATTTCAGGCATATGCTCCTTTGCAAATGTTATATCTCCCTTTGCTTTCTCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.4

Weight (kDa)

5.36

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 96, 222
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 490
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 19
AflII CTTAAG 1 cut(s) 509
AluBI AGCT 4 cut(s) 131, 334, 389, 413
AluI AGCT 4 cut(s) 131, 334, 389, 413
AlwI GGATC 1 cut(s) 490
AoxI GGCC 2 cut(s) 10, 258
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 17, 259, 342
AsuC2I CCSGG 2 cut(s) 14, 55
AsuHPI GGTGA 1 cut(s) 68
AsuII TTCGAA 1 cut(s) 246
AvaII GGWCC 2 cut(s) 17, 342
BaeGI GKGCMC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 443
BciVI GTATCC 1 cut(s) 345
BcnI CCSGG 2 cut(s) 14, 55
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 522
BfrI CTTAAG 1 cut(s) 509
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 14, 55
Bme18I GGWCC 2 cut(s) 17, 342
BmgT120I GGNCC 3 cut(s) 17, 259, 342
BmiI GGNNCC 2 cut(s) 18, 106
BmrFI CCNGG 2 cut(s) 14, 55
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 2 cut(s) 14, 55
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 13, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 82
BseDI CCNNGG 2 cut(s) 13, 54
BseGI GGATG 2 cut(s) 130, 333
BseLI CCNNNNNNNGG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 44, 608
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 2 cut(s) 12, 260
BsiSI CCGG 3 cut(s) 13, 20, 54
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 2 cut(s) 12, 260
Bsp119I TTCGAA 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 2 cut(s) 133, 495
BspACI CCGC 1 cut(s) 35
BspANI GGCC 2 cut(s) 12, 260
BspLI GGNNCC 2 cut(s) 18, 106
BspPI GGATC 1 cut(s) 490
BspT104I TTCGAA 1 cut(s) 246
BspTI CTTAAG 1 cut(s) 509
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 13, 54
BssMI GATC 2 cut(s) 133, 495
BssNI GRCGYC 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 428
BstACI GRCGYC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 336
BstF5I GGATG 2 cut(s) 130, 333
BstKTI GATC 2 cut(s) 136, 498
BstMBI GATC 2 cut(s) 133, 495
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 12, 53
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 2 cut(s) 12, 260
BtsCI GGATG 2 cut(s) 130, 333
Cac8I GCNNGC 1 cut(s) 336
Cfr13I GGNCC 3 cut(s) 17, 259, 342
CseI GACGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 251, 263
CviQI GTAC 1 cut(s) 112
DpnI GATC 2 cut(s) 135, 497
DpnII GATC 2 cut(s) 133, 495
EciI GGCGGA 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 17, 342
FaeI CATG 2 cut(s) 254, 266
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 250, 262
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 2 cut(s) 137, 340
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 504
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 12, 260
HapII CCGG 3 cut(s) 13, 20, 54
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 2 cut(s) 254, 266
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 1 cut(s) 188
HpaII CCGG 3 cut(s) 13, 20, 54
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 4 cut(s) 28, 138, 193, 623
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 216, 355
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 163, 566, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 254, 266
Kzo9I GATC 2 cut(s) 133, 495
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 1 cut(s) 175
MaeI CTAG 1 cut(s) 504
MalI GATC 2 cut(s) 135, 497
MboI GATC 2 cut(s) 133, 495
MboII GAAGA 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 2 cut(s) 98, 227
MmeI TCCRAC 2 cut(s) 6, 92
MnlI CCTC 4 cut(s) 22, 25, 31, 250
MseI TTAA 1 cut(s) 510
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 3 cut(s) 13, 20, 54
MspR9I CCNGG 2 cut(s) 14, 55
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 2 cut(s) 14, 55
NdeI CATATG 1 cut(s) 577
NdeII GATC 2 cut(s) 133, 495
NlaIII CATG 2 cut(s) 254, 266
NlaIV GGNNCC 2 cut(s) 18, 106
NspV TTCGAA 1 cut(s) 246
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 165
PsiI TTATAA 2 cut(s) 96, 222
PspN4I GGNNCC 2 cut(s) 18, 106
PspPI GGNCC 3 cut(s) 17, 259, 342
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 133, 495
Sau96I GGNCC 3 cut(s) 17, 259, 342
ScaI AGTACT 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 14, 55
SduI GDGCHC 1 cut(s) 493
SetI ASST 7 cut(s) 133, 219, 318, 336, 358, 391, 415
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 2 cut(s) 17, 342
SmlI CTYRAG 2 cut(s) 509, 557
SmoI CTYRAG 2 cut(s) 509, 557
Sse9I AATT 2 cut(s) 98, 227
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 12, 53
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 98, 227
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 165, 344, 543
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 17, 342
XapI RAATTY 1 cut(s) 98
XspI CTAG 1 cut(s) 504
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.