Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

46014688 .. 46015407

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGGGAGTGAAGATGTTGAGAAAGCTCATAGGTTTCTTGATGACGTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGTATAACCACTCTTTCTCTCTTTCTTTATATTCATTTATATGGACAAAAATGTTGGTGTTCAGTCCAACTCATCACCCCCAGTTTATCTGTTATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCTGATTTTGAGTGCTTCTGGTTTGGTGCAGCGAGTATCTTCATTTGGGACAGAATCAAATTGGATAGAGCCTTCTGTTTACCTTTGTAATTCCCAGCCTCAGGGACGTCAAAGAATCAGATTGGAGGGTCATCTTGGTTTTGGTTTTAAAGAATTGAATTTGGCTTTCATTGTGTTAGATAAGAAATTAGTTGTGGGAGAGTTCGAACATGGAGAGGCCCATGTGGAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.73

Weight (kDa)

5.24

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AatII	GACGTC	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	206, 400
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	107, 400
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	29, 239
AluI	AGCT	2 cut(s)	29, 239
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	206, 400
AspS9I	GGNCC	2 cut(s)	59, 460
AsuHPI	GGTGA	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 460
BmiI	GGNNCC	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	283
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	461
BslFI	GGGAC	2 cut(s)	304, 360
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmFI	GGGAC	2 cut(s)	304, 360
BsnI	GGCC	1 cut(s)	461
Bsp119I	TTCGAA	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	59, 460
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	452, 464
CviJI	RGCY	6 cut(s)	29, 239, 313, 340, 407, 461
CviKI_1	RGCY	6 cut(s)	29, 239, 313, 340, 407, 461
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DraI	TTTAAA	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	455, 467
FaiI	YATR	8 cut(s)	33, 114, 139, 149, 151, 204, 453, 465
FaqI	GGGAC	2 cut(s)	304, 360
FatI	CATG	2 cut(s)	451, 463
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	455, 467
HinfI	GANTC	2 cut(s)	296, 357
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	85, 322
Hpy188I	TCNGA	3 cut(s)	217, 246, 362
Hpy188III	TCNNGA	2 cut(s)	41, 72
Hpy8I	GTNNAC	2 cut(s)	85, 322
HpyAV	CCTTC	3 cut(s)	78, 324, 464
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	2 cut(s)	48, 349
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	2 cut(s)	48, 349
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	455, 467
Kzo9I	GATC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	6 cut(s)	57, 75, 203, 246, 329, 350
Lsp1109I	GCAGC	1 cut(s)	283
MaeII	ACGT	2 cut(s)	48, 349
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	3 cut(s)	26, 95, 273
MluCI	AATT	6 cut(s)	206, 301, 331, 395, 400, 428
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	3 cut(s)	351, 361, 451
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	455, 467
NlaIV	GGNNCC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	296, 357
PkrI	GCNGC	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	59, 460
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	2 cut(s)	59, 460
ScaI	AGTACT	1 cut(s)	221
SetI	ASST	8 cut(s)	31, 38, 51, 64, 241, 327, 352, 475
SfuI	TTCGAA	1 cut(s)	447
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	6 cut(s)	206, 301, 331, 395, 400, 428
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	2 cut(s)	51, 352
TaqI	TCGA	1 cut(s)	447
TasI	AATT	6 cut(s)	206, 301, 331, 395, 400, 428
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	296, 357
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	4 cut(s)	93, 132, 273, 400
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	2 cut(s)	206, 400
ZraI	GACGTC	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.