Rmu_sc0001552.1_g000018

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001552.1
OG0002211
Physical Location & Seq
Forward (+)
57162 .. 59621
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001552.1_g000018.1.cds

Sequence Viewer

Length: 1140 bp
atggtggggcccaaccacgacatgcatgccatagccggacatacaacctacctcgtggcggaccgctactccgaggatttgatgacttccgctttctgtaacacaagagacagggcatcagagggagaccgcgttgagcggtcttcacttctccgatgcctaagtggggagaaggttgatcttcttcttgtctttgatgtggtactgatgtgttttgacacccagcgtctggagcttctgatgccaacttggcgctgcgcgtggcggcgcgttagctgtgatctgggggcgatcccgggctcgggcggtagcccgcctggctgtgtcaccgcaggtcacccacttgctaattatgctggcaatcgtacatatatgtacaagtcccccaagtccccagtcaaggagggcaatcttggttggggagttgatcggcggtgtgaagcgttttctcctcttagacttgcaaaaagcataattagcgtcagtgcgttcactactagaataatgctaatagacatcacgtcatttaaatcggttaagatttcacccgattcatcgccggaggacgtgcagtctgccgttgactcgtcggaagaaggcgaagaaggtggtgactgcggaggaagaagggcctgtgtgacaccgattttacttccgcattccggtggttccaactggcctacttcacctcagtttgatgatttcgattgggtttctgtggacgggagtgaagatgttgagaaagctcatgggtttcttgatgacgttgttcttggacctgttccttttggagatgaagttcacaacgctgtttctgttcttcaacaggtgttcagtccaactcatcacccccagtttatctgttataaatttggttccgagtacttggacaaggatgtagctgatctgattttgagtgcttctggttcggtgcagggagtatcttcatttgggacagaatcagattggatagtgccttctgtttacctttgtaattcccagcctcagggacgtcaaagaatcagattggaaggtcatcttggttttggttttaaagaattgaatttggctttcattgtgttagataagaaattagttgtgggagagttcgaacatggagaggcccatgtggaaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

41.37

Weight (kDa)

5.05

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
AatII GACGTC 1 cut(s) 1015
Acc36I ACCTGC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 3 cut(s) 132, 260, 270
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 2 cut(s) 869, 1063
AcyI GRCGYC 1 cut(s) 1012
AfaI GTAC 4 cut(s) 204, 367, 377, 884
AfiI CCNNNNNNNGG 8 cut(s) 58, 166, 229, 301, 302, 400, 662, 1006
AgsI TTSAA 2 cut(s) 824, 1063
AhdI GACNNNNNGTC 2 cut(s) 520, 571
AjiI CACGTC 2 cut(s) 522, 568
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 1023, 1055
AloI GAACNNNNNNTCC 2 cut(s) 783, 815
AluBI AGCT 4 cut(s) 235, 276, 746, 902
AluI AGCT 4 cut(s) 235, 276, 746, 902
Alw26I GTCTC 2 cut(s) 102, 120
AlwI GGATC 1 cut(s) 286
AlwNI CAGNNNCTG 1 cut(s) 229
Ama87I CYCGRG 2 cut(s) 295, 301
AoxI GGCC 4 cut(s) 8, 630, 677, 1122
ApaI GGGCCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 869, 1063
AspLEI GCGC 3 cut(s) 255, 260, 270
AspS9I GGNCC 6 cut(s) 8, 9, 61, 630, 776, 1123
AsuC2I CCSGG 2 cut(s) 296, 297
AsuHPI GGTGA 6 cut(s) 319, 329, 537, 623, 678, 839
AsuII TTCGAA 1 cut(s) 1110
AvaI CYCGRG 2 cut(s) 295, 301
AvaII GGWCC 2 cut(s) 61, 776
AxyI CCTNAGG 1 cut(s) 1005
BaeGI GKGCMC 1 cut(s) 12
BaeI ACNNNNGTAYC 2 cut(s) 194, 227
BanII GRGCYC 2 cut(s) 12, 302
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 563
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 2 cut(s) 296, 297
BcoDI GTCTC 2 cut(s) 102, 120
BfaI CTAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 323
BglI GCCNNNNNGGC 2 cut(s) 250, 318
BisI GCNGC 2 cut(s) 256, 266
BlsI GCNGC 2 cut(s) 257, 267
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 3 cut(s) 296, 297, 318
Bme18I GGWCC 2 cut(s) 61, 776
BmeRI GACNNNNNGTC 2 cut(s) 520, 571
BmeT110I CYCGRG 2 cut(s) 295, 301
BmgBI CACGTC 2 cut(s) 522, 568
BmgT120I GGNCC 6 cut(s) 8, 9, 61, 630, 776, 1123
BmiI GGNNCC 4 cut(s) 9, 10, 670, 877
BmrFI CCNGG 3 cut(s) 296, 297, 318
BmrI ACTGGG 2 cut(s) 389, 847
BmsI GCATC 3 cut(s) 125, 146, 231
BmuI ACTGGG 2 cut(s) 389, 847
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 1110
BpuMI CCSGG 2 cut(s) 296, 297
BsaHI GRCGYC 1 cut(s) 1012
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 72, 295
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 117, 147, 783, 813
Bsc4I CCNNNNNNNGG 8 cut(s) 58, 166, 229, 301, 302, 400, 662, 1006
Bse1I ACTGG 3 cut(s) 395, 680, 853
Bse21I CCTNAGG 1 cut(s) 1005
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 72, 295
BseGI GGATG 1 cut(s) 901
BseLI CCNNNNNNNGG 8 cut(s) 58, 166, 229, 301, 302, 400, 662, 1006
BseMII CTCAG 2 cut(s) 704, 1019
BseNI ACTGG 3 cut(s) 395, 680, 853
BseRI GAGGAG 1 cut(s) 441
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 242
BseYI CCCAGC 2 cut(s) 222, 999
BsgI GTGCAG 2 cut(s) 590, 953
Bsh1236I CGCG 3 cut(s) 132, 260, 270
BshFI GGCC 4 cut(s) 10, 632, 679, 1124
BsiHKCI CYCGRG 2 cut(s) 295, 301
BsiSI CCGG 4 cut(s) 36, 296, 560, 663
BslFI GGGAC 4 cut(s) 367, 376, 967, 1023
BslI CCNNNNNNNGG 8 cut(s) 58, 166, 229, 301, 302, 400, 662, 1006
BsmAI GTCTC 2 cut(s) 102, 120
BsmFI GGGAC 4 cut(s) 367, 376, 967, 1023
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 4 cut(s) 10, 632, 679, 1124
Bso31I GGTCTC 1 cut(s) 120
BsoBI CYCGRG 2 cut(s) 295, 301
Bsp119I TTCGAA 1 cut(s) 1110
Bsp120I GGGCCC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 12, 302
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 5 cut(s) 178, 280, 291, 427, 904
BspANI GGCC 4 cut(s) 10, 632, 679, 1124
BspCNI CTCAG 2 cut(s) 703, 1018
BspFNI CGCG 3 cut(s) 132, 260, 270
BspLI GGNNCC 4 cut(s) 9, 10, 670, 877
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 1110
BspTNI GGTCTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 3 cut(s) 395, 680, 853
BssECI CCNNGG 2 cut(s) 72, 295
BssMI GATC 5 cut(s) 178, 280, 291, 427, 904
BssNI GRCGYC 1 cut(s) 1012
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 1012
BstAUI TGTACA 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 1110
BstC8I GCNNGC 3 cut(s) 27, 314, 358
BstDEI CTNAG 4 cut(s) 161, 455, 690, 1005
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 901
BstFNI CGCG 3 cut(s) 132, 260, 270
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 3 cut(s) 255, 260, 270
BstKTI GATC 5 cut(s) 181, 283, 294, 430, 907
BstMAI GTCTC 2 cut(s) 102, 120
BstMBI GATC 5 cut(s) 178, 280, 291, 427, 904
BstMWI GCNNNNNNNGC 6 cut(s) 232, 241, 250, 318, 353, 477
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 2 cut(s) 25, 29
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 294, 295, 316
BstSLI GKGCMC 1 cut(s) 12
BstUI CGCG 3 cut(s) 132, 260, 270
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 135
Bsu36I CCTNAGG 1 cut(s) 1005
BsuRI GGCC 4 cut(s) 10, 632, 679, 1124
BtgZI GCGATG 1 cut(s) 540
BtrI CACGTC 2 cut(s) 522, 568
BtsCI GGATG 1 cut(s) 901
BtsIMutI CAGTG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 3 cut(s) 27, 314, 358
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 3 cut(s) 255, 260, 270
Cfr13I GGNCC 6 cut(s) 8, 9, 61, 630, 776, 1123
Cfr9I CCCGGG 1 cut(s) 295
CpoI CGGWCCG 1 cut(s) 61
CseI GACGC 2 cut(s) 215, 469
Csp6I GTAC 4 cut(s) 203, 366, 376, 883
CspI CGGWCCG 1 cut(s) 61
CviAII CATG 5 cut(s) 22, 26, 749, 1115, 1127
CviQI GTAC 4 cut(s) 203, 366, 376, 883
DdeI CTNAG 4 cut(s) 161, 455, 690, 1005
DpnI GATC 5 cut(s) 180, 282, 293, 429, 906
DpnII GATC 5 cut(s) 178, 280, 291, 427, 904
DraI TTTAAA 2 cut(s) 529, 1054
DriI GACNNNNNGTC 2 cut(s) 520, 571
Eam1105I GACNNNNNGTC 2 cut(s) 520, 571
EciI GGCGGA 1 cut(s) 74
Eco24I GRGCYC 2 cut(s) 12, 302
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 61, 776
Eco81I CCTNAGG 1 cut(s) 1005
Eco88I CYCGRG 2 cut(s) 295, 301
Eco91I GGTNACC 1 cut(s) 335
EcoO109I RGGNCCY 2 cut(s) 8, 630
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 12, 302
FaeI CATG 5 cut(s) 25, 29, 752, 1118, 1130
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FaqI GGGAC 4 cut(s) 367, 376, 967, 1023
FatI CATG 5 cut(s) 21, 25, 748, 1114, 1126
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 256, 266
FokI GGATG 1 cut(s) 908
FriOI GRGCYC 2 cut(s) 12, 302
Fsp4HI GCNGC 2 cut(s) 256, 266
FspBI CTAG 1 cut(s) 498
GlaI GCGC 3 cut(s) 254, 259, 269
GluI GCNGC 2 cut(s) 256, 266
GsaI CCCAGC 2 cut(s) 226, 1003
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 4 cut(s) 10, 632, 679, 1124
HapII CCGG 4 cut(s) 36, 296, 560, 663
HgaI GACGC 2 cut(s) 215, 469
HhaI GCGC 3 cut(s) 255, 260, 270
Hin1I GRCGYC 1 cut(s) 1012
Hin1II CATG 5 cut(s) 25, 29, 752, 1118, 1130
Hin6I GCGC 3 cut(s) 253, 258, 268
HinP1I GCGC 3 cut(s) 253, 258, 268
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 4 cut(s) 551, 584, 959, 1020
HpaII CCGG 4 cut(s) 36, 296, 560, 663
HphI GGTGA 6 cut(s) 319, 329, 537, 623, 678, 839
Hpy166II GTNNAC 5 cut(s) 492, 583, 721, 802, 985
Hpy188I TCNGA 9 cut(s) 73, 121, 155, 240, 592, 880, 909, 964, 1025
Hpy188III TCNNGA 2 cut(s) 230, 758
Hpy8I GTNNAC 5 cut(s) 492, 583, 721, 802, 985
Hpy99I CGWCG 1 cut(s) 592
HpyAV CCTTC 7 cut(s) 166, 590, 599, 621, 987, 1025, 1127
HpyCH4IV ACGT 4 cut(s) 521, 567, 765, 1012
HpyCH4V TGCA 4 cut(s) 25, 464, 571, 934
HpyF10VI GCNNNNNNNGC 6 cut(s) 232, 241, 250, 318, 353, 477
HpyF3I CTNAG 4 cut(s) 161, 455, 690, 1005
HpySE526I ACGT 4 cut(s) 521, 567, 765, 1012
Hsp92I GRCGYC 1 cut(s) 1012
Hsp92II CATG 5 cut(s) 25, 29, 752, 1118, 1130
HspAI GCGC 3 cut(s) 253, 258, 268
Kzo9I GATC 5 cut(s) 178, 280, 291, 427, 904
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 3 cut(s) 125, 146, 231
MaeI CTAG 1 cut(s) 498
MaeII ACGT 4 cut(s) 521, 567, 765, 1012
MaeIII GTNAC 5 cut(s) 98, 325, 335, 611, 637
MalI GATC 5 cut(s) 180, 282, 293, 429, 906
MbiI CCGCTC 1 cut(s) 139
MboI GATC 5 cut(s) 178, 280, 291, 427, 904
MboII GAAGA 9 cut(s) 135, 173, 176, 605, 614, 636, 743, 812, 936
MhlI GDGCHC 2 cut(s) 12, 302
MluCI AATT 7 cut(s) 349, 474, 869, 994, 1058, 1063, 1091
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 3 cut(s) 570, 696, 863
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 3 cut(s) 528, 537, 1053
MslI CAYNNNNRTG 1 cut(s) 663
MspI CCGG 4 cut(s) 36, 296, 560, 663
MspR9I CCNGG 3 cut(s) 296, 297, 318
MteI GCGCNGCGC 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 3 cut(s) 132, 260, 270
MwoI GCNNNNNNNGC 6 cut(s) 232, 241, 250, 318, 353, 477
NciI CCSGG 2 cut(s) 296, 297
NdeII GATC 5 cut(s) 178, 280, 291, 427, 904
NlaIII CATG 5 cut(s) 25, 29, 752, 1118, 1130
NlaIV GGNNCC 4 cut(s) 9, 10, 670, 877
NmuCI GTSAC 4 cut(s) 325, 335, 611, 637
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 2 cut(s) 25, 29
NspV TTCGAA 1 cut(s) 1110
PaeI GCATGC 1 cut(s) 29
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 3 cut(s) 551, 959, 1020
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 2 cut(s) 257, 267
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PsiI TTATAA 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 316
PspEI GGTNACC 1 cut(s) 335
PspFI CCCAGC 2 cut(s) 222, 999
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 4 cut(s) 9, 10, 670, 877
PspOMI GGGCCC 1 cut(s) 8
PspPI GGNCC 6 cut(s) 8, 9, 61, 630, 776, 1123
PstNI CAGNNNCTG 1 cut(s) 229
RsaI GTAC 4 cut(s) 204, 367, 377, 884
RsaNI GTAC 4 cut(s) 203, 366, 376, 883
RseI CAYNNNNRTG 1 cut(s) 663
Rsr2I CGGWCCG 1 cut(s) 61
RsrII CGGWCCG 1 cut(s) 61
SaqAI TTAA 3 cut(s) 528, 537, 1053
SatI GCNGC 2 cut(s) 256, 266
Sau3AI GATC 5 cut(s) 178, 280, 291, 427, 904
Sau96I GGNCC 6 cut(s) 8, 9, 61, 630, 776, 1123
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 3 cut(s) 296, 297, 318
SduI GDGCHC 2 cut(s) 12, 302
SfaNI GCATC 3 cut(s) 125, 146, 231
SfuI TTCGAA 1 cut(s) 1110
SinI GGWCC 2 cut(s) 61, 776
SmaI CCCGGG 1 cut(s) 297
SmiI ATTTAAAT 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 663
SphI GCATGC 1 cut(s) 29
Sse9I AATT 7 cut(s) 349, 474, 869, 994, 1058, 1063, 1091
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 3 cut(s) 294, 295, 316
SwaI ATTTAAAT 1 cut(s) 529
TaiI ACGT 4 cut(s) 524, 570, 768, 1015
TaqI TCGA 2 cut(s) 705, 1110
TasI AATT 7 cut(s) 349, 474, 869, 994, 1058, 1063, 1091
TatI WGTACW 2 cut(s) 375, 882
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 3 cut(s) 551, 959, 1020
Tru1I TTAA 3 cut(s) 528, 537, 1053
Tru9I TTAA 3 cut(s) 528, 537, 1053
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 4 cut(s) 325, 335, 611, 637
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 4 cut(s) 325, 335, 611, 637
TspDTI ATGAA 4 cut(s) 543, 810, 936, 1063
TspMI CCCGGG 1 cut(s) 295
TspRI CASTG 1 cut(s) 490
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 61, 776
XapI RAATTY 2 cut(s) 869, 1063
XceI RCATGY 2 cut(s) 25, 29
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 1 cut(s) 498
ZraI GACGTC 1 cut(s) 1013
ZrmI AGTACT 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.