Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8246273.1

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 678

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8246273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 412 bp

caactggcccacttcgcctcagtttgatgatttcgattgggtttctgtggacgggagtgaagacgttgagaaagctcatgggtttcttgatgactttgttcttggacctgttccttctggagatgaagttcacaacgctgtttctgctcttcaacaggtgttcactcctactcatcatccccagttcatccgggataaatttggttccgagtacttggacaaggatgtagctgatccgattttgagtgcttctggttcggtgcagcgagtatcttcatttgggacagaatcagattggatggagccttctgcttacctttgtaattcccagcctcagggatgtcaaagagtttatgaggctttcagtttattgcagaatgagtcatctgttcaggtccctatctcttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.03

Weight (kDa)

4.17

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	153
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
AluBI	AGCT	2 cut(s)	75, 231
AluI	AGCT	2 cut(s)	75, 231
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	3 cut(s)	7, 105, 395
AsuC2I	CCSGG	1 cut(s)	192
AvaII	GGWCC	2 cut(s)	105, 395
AxyI	CCTNAGG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	293
BcnI	CCSGG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	2 cut(s)	105, 395
BmgT120I	GGNCC	3 cut(s)	7, 105, 395
BmiI	GGNNCC	3 cut(s)	206, 304, 397
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	9, 182
Bse21I	CCTNAGG	1 cut(s)	334
BseGI	GGATG	5 cut(s)	176, 187, 230, 304, 345
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	33, 348
BseNI	ACTGG	2 cut(s)	9, 182
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	296, 381
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	296, 381
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	32, 347
BspLI	GGNNCC	3 cut(s)	206, 304, 397
BspPI	GGATC	1 cut(s)	228
BspQI	GCTCTTC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	9, 182
BssMI	GATC	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	19, 334
BstF5I	GGATG	5 cut(s)	176, 187, 230, 304, 345
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 144
BstSCI	CCNGG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	5 cut(s)	176, 187, 230, 304, 345
Cfr13I	GGNCC	3 cut(s)	7, 105, 395
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	6 cut(s)	8, 75, 231, 305, 332, 360
CviKI_1	RGCY	6 cut(s)	8, 75, 231, 305, 332, 360
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	19, 334
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	105, 395
Eco81I	CCTNAGG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	395
FaeI	CATG	1 cut(s)	81
FaiI	YATR	2 cut(s)	79, 355
FaqI	GGGAC	2 cut(s)	296, 381
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	5 cut(s)	163, 174, 237, 311, 352
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	1 cut(s)	81
HinfI	GANTC	2 cut(s)	288, 381
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	50, 131, 163
Hpy188I	TCNGA	3 cut(s)	209, 238, 293
Hpy188III	TCNNGA	2 cut(s)	87, 118
Hpy8I	GTNNAC	3 cut(s)	50, 131, 163
HpyAV	CCTTC	2 cut(s)	124, 316
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	263, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 144
HpyF3I	CTNAG	2 cut(s)	19, 334
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	233
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	9 cut(s)	103, 121, 141, 195, 204, 238, 321, 342, 378
Lsp1109I	GCAGC	1 cut(s)	275
MaeII	ACGT	1 cut(s)	64
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	3 cut(s)	72, 141, 265
MluCI	AATT	2 cut(s)	198, 323
MlyI	GAGTC	1 cut(s)	390
MnlI	CCTC	3 cut(s)	28, 343, 350
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	14, 144
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	3 cut(s)	206, 304, 397
PciSI	GCTCTTC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	206, 304, 397
PspPI	GGNCC	3 cut(s)	7, 105, 395
PspPPI	RGGWCCY	1 cut(s)	395
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	3 cut(s)	7, 105, 395
ScaI	AGTACT	1 cut(s)	213
SchI	GAGTC	1 cut(s)	390
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	7 cut(s)	67, 77, 110, 160, 233, 319, 397
SinI	GGWCC	2 cut(s)	105, 395
Sse9I	AATT	2 cut(s)	198, 323
StyD4I	CCNGG	1 cut(s)	190
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	198, 323
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	288
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	139, 176, 265
VpaK11BI	GGWCC	2 cut(s)	105, 395
XapI	RAATTY	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.