Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

60579837 .. 60581774

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG386000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATGTTCGGCGGCAGAAGCATGGGCGGCGGTGGCGGTGGCGGTGGAGGAAGTATGTTCCGTACAGTCAGCAGGGCGGCGCTGACTAGAACCACCGGTGTGGCAATCCAAGAACCCATCACTTCTTCGAGTTCTAACACCAGCACAACCACCACGACTGCTACTAGTCCTTCGGCTTCTAGGAATACCCAGAAACCCGGTTCGGCTAGTAACCTCTGTCTCTCTTCTCCTACCTCTCCGAATTGTGGGCCCGTTTCTGCGAGTTCCGACGGCCACAACTGGCCCACTTCGCCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGACGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCACTCCGACTCATCATCCCCAGTTCATCCGGGATAAATTTGGTTCCGAGTACTTGGACAAGGACGTAGCTGATCCGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTCTGCTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATGGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAATCCTTCTATGCAGCTGAAGACAATAGTTCCCAGAGTCCATCTGAGGATTCTGATGATAACAGTACAGCAACAAACTTTTTGAGGTGGATCTTTCAAAATACCTATGGAAAGGTAATGGAGGTAATAGAGAACATTACCAAGCTTTTTGATCATTTGCTTCAACCTCAAGGCAGTGGCAAGGCGAAAGGTGAAGCTGGTAATCTGTTTGAGGAGAGGCTGAGAACATCATTCATGCTCTCTGTCGTGGTCCTCTTGGTTGTGGTGGTTACTCGAACCCACAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

37.14

Weight (kDa)

4.78

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	12, 27, 30, 36, 42, 77
AclWI	GGATC	2 cut(s)	503, 845
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	64, 488, 814
AfiI	CCNNNNNNNGG	2 cut(s)	245, 610
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	428, 845, 911
AhlI	ACTAGT	1 cut(s)	164
AleI	CACNNNNGTG	1 cut(s)	98
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	6 cut(s)	350, 506, 742, 764, 892, 944
AluI	AGCT	6 cut(s)	350, 506, 742, 764, 892, 944
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	503, 845
AoxI	GGCC	3 cut(s)	248, 271, 281
ApaI	GGGCCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	538, 761
ApoI	RAATTY	1 cut(s)	473
AsiGI	ACCGGT	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	5 cut(s)	248, 249, 282, 380, 997
AsuC2I	CCSGG	2 cut(s)	198, 467
AsuHPI	GGTGA	2 cut(s)	745, 950
AvaII	GGWCC	2 cut(s)	380, 997
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	2 cut(s)	342, 774
BbvCI	CCTCAGC	1 cut(s)	743
BbvI	GCAGC	2 cut(s)	550, 773
BccI	CCATC	3 cut(s)	125, 568, 796
BceAI	ACGGC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	898
BcnI	CCSGG	2 cut(s)	198, 467
BcoDI	GTCTC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	4 cut(s)	87, 165, 180, 207
BfoI	RGCGCY	1 cut(s)	83
BisI	GCNGC	5 cut(s)	13, 28, 78, 539, 762
BlsI	GCNGC	5 cut(s)	14, 29, 79, 540, 763
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	198, 467
Bme18I	GGWCC	2 cut(s)	380, 997
BmgT120I	GGNCC	5 cut(s)	248, 249, 282, 380, 997
BmiI	GGNNCC	3 cut(s)	250, 481, 579
BmrFI	CCNGG	2 cut(s)	198, 467
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	1 cut(s)	700
BmuI	ACTGGG	1 cut(s)	451
BpiI	GAAGAC	2 cut(s)	342, 774
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	900
BpuMI	CCSGG	2 cut(s)	198, 467
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 610
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	284, 457
Bse21I	CCTNAGG	1 cut(s)	609
BseGI	GGATG	5 cut(s)	451, 462, 579, 620, 715
BseLI	CCNNNNNNNGG	2 cut(s)	245, 610
BseMII	CTCAG	5 cut(s)	308, 623, 734, 783, 959
BseNI	ACTGG	2 cut(s)	284, 457
BseRI	GAGGAG	1 cut(s)	974
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	550, 773
BseYI	CCCAGC	1 cut(s)	603
BsgI	GTGCAG	1 cut(s)	557
BshFI	GGCC	3 cut(s)	250, 273, 283
BshTI	ACCGGT	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	96, 198, 466
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	245, 610
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	3 cut(s)	250, 273, 283
Bsp120I	GGGCCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	508, 837, 898
BspACI	CCGC	6 cut(s)	12, 27, 30, 36, 42, 77
BspANI	GGCC	3 cut(s)	250, 273, 283
BspCNI	CTCAG	5 cut(s)	307, 622, 735, 784, 960
BspLI	GGNNCC	3 cut(s)	250, 481, 579
BspPI	GGATC	2 cut(s)	503, 845
BspQI	GCTCTTC	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	284, 457
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	3 cut(s)	508, 837, 898
Bst4CI	ACNGT	3 cut(s)	67, 812, 1031
Bst6I	CTCTTC	2 cut(s)	229, 429
BstDEI	CTNAG	5 cut(s)	294, 609, 743, 792, 968
BstF5I	GGATG	5 cut(s)	451, 462, 579, 620, 715
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	511, 840, 901
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	3 cut(s)	508, 837, 898
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 27, 33, 289, 419
BstSCI	CCNGG	2 cut(s)	196, 465
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	550, 773
BstV2I	GAAGAC	2 cut(s)	342, 774
BstX2I	RGATCY	1 cut(s)	837
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	837
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	3 cut(s)	250, 273, 283
BtsCI	GGATG	5 cut(s)	451, 462, 579, 620, 715
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	2 cut(s)	928, 1036
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	5 cut(s)	248, 249, 282, 380, 997
Csp6I	GTAC	3 cut(s)	63, 487, 813
CspAI	ACCGGT	1 cut(s)	95
CspCI	CAANNNNNGTGG	1 cut(s)	1016
CviAII	CATG	3 cut(s)	22, 353, 982
CviQI	GTAC	3 cut(s)	63, 487, 813
DdeI	CTNAG	5 cut(s)	294, 609, 743, 792, 968
DpnI	GATC	3 cut(s)	510, 839, 900
DpnII	GATC	3 cut(s)	508, 837, 898
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	229, 429
EarI	CTCTTC	2 cut(s)	229, 429
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	380, 997
Eco57I	CTGAAG	1 cut(s)	786
Eco81I	CCTNAGG	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	3 cut(s)	25, 356, 985
FaiI	YATR	7 cut(s)	23, 56, 354, 630, 759, 855, 983
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	3 cut(s)	21, 352, 981
FbaI	TGATCA	1 cut(s)	898
Fnu4HI	GCNGC	5 cut(s)	13, 28, 78, 539, 762
FokI	GGATG	5 cut(s)	438, 449, 586, 627, 722
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	13, 28, 78, 539, 762
FspBI	CTAG	4 cut(s)	87, 165, 180, 207
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	5 cut(s)	13, 28, 78, 539, 762
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	250, 273, 283
HapII	CCGG	3 cut(s)	96, 198, 466
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	25, 356, 985
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	890
HinfI	GANTC	6 cut(s)	445, 563, 656, 749, 784, 797
HpaII	CCGG	3 cut(s)	96, 198, 466
HphI	GGTGA	2 cut(s)	745, 950
Hpy166II	GTNNAC	3 cut(s)	325, 406, 438
Hpy188III	TCNNGA	2 cut(s)	362, 393
Hpy8I	GTNNAC	3 cut(s)	325, 406, 438
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	4 cut(s)	180, 399, 591, 763
HpyCH4III	ACNGT	3 cut(s)	67, 812, 1031
HpyCH4IV	ACGT	2 cut(s)	339, 501
HpyCH4V	TGCA	3 cut(s)	538, 649, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 27, 33, 289, 419
HpyF3I	CTNAG	5 cut(s)	294, 609, 743, 792, 968
HpySE526I	ACGT	2 cut(s)	339, 501
Hsp92II	CATG	3 cut(s)	25, 356, 985
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	508, 837, 898
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	577, 739
Lsp1109I	GCAGC	2 cut(s)	550, 773
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	4 cut(s)	87, 165, 180, 207
MaeII	ACGT	2 cut(s)	339, 501
MaeIII	GTNAC	2 cut(s)	209, 1015
MalI	GATC	3 cut(s)	510, 839, 900
MboI	GATC	3 cut(s)	508, 837, 898
MboII	GAAGA	6 cut(s)	117, 216, 347, 416, 540, 779
MflI	RGATCY	1 cut(s)	837
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	241, 473, 598
MlyI	GAGTC	3 cut(s)	439, 665, 793
MmeI	TCCRAC	2 cut(s)	291, 467
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	3 cut(s)	96, 198, 466
MspR9I	CCNGG	2 cut(s)	198, 467
MwoI	GCNNNNNNNGC	5 cut(s)	18, 27, 33, 289, 419
NciI	CCSGG	2 cut(s)	198, 467
NdeII	GATC	3 cut(s)	508, 837, 898
NlaIII	CATG	3 cut(s)	25, 356, 985
NlaIV	GGNNCC	3 cut(s)	250, 481, 579
OliI	CACNNNNGTG	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	563, 749, 797
PfoI	TCCNGGA	1 cut(s)	465
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	5 cut(s)	14, 29, 79, 540, 763
PleI	GAGTC	3 cut(s)	439, 664, 792
PpsI	GAGTC	3 cut(s)	439, 664, 792
PspFI	CCCAGC	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	250, 481, 579
PspOMI	GGGCCC	1 cut(s)	248
PspPI	GGNCC	5 cut(s)	248, 249, 282, 380, 997
PsuI	RGATCY	1 cut(s)	837
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	64, 488, 814
RsaNI	GTAC	3 cut(s)	63, 487, 813
RseI	CAYNNNNRTG	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	429
SatI	GCNGC	5 cut(s)	13, 28, 78, 539, 762
Sau3AI	GATC	3 cut(s)	508, 837, 898
Sau96I	GGNCC	5 cut(s)	248, 249, 282, 380, 997
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	3 cut(s)	439, 665, 793
ScrFI	CCNGG	2 cut(s)	198, 467
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	700
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	380, 997
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	3 cut(s)	241, 473, 598
SsiI	CCGC	6 cut(s)	12, 27, 30, 36, 42, 77
SspMI	CTAG	4 cut(s)	87, 165, 180, 207
StyD4I	CCNGG	2 cut(s)	196, 465
TaaI	ACNGT	3 cut(s)	67, 812, 1031
TaiI	ACGT	2 cut(s)	342, 504
TaqI	TCGA	3 cut(s)	128, 309, 1021
TasI	AATT	3 cut(s)	241, 473, 598
TatI	WGTACW	2 cut(s)	486, 812
TauI	GCSGC	3 cut(s)	15, 30, 80
TfiI	GAWTC	3 cut(s)	563, 749, 797
TscAI	CASTG	2 cut(s)	928, 1036
TseI	GCWGC	2 cut(s)	538, 761
TspDTI	ATGAA	6 cut(s)	414, 451, 540, 672, 734, 970
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	928, 1036
VpaK11BI	GGWCC	2 cut(s)	380, 997
XapI	RAATTY	1 cut(s)	473
XspI	CTAG	4 cut(s)	87, 165, 180, 207
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.