RchiOBHm_Chr1g0374081

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002211
Physical Location & Seq
Reverse (-)
62015683 .. 62018200
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59791

Sequence Viewer

Length: 1023 bp
ATGATGTTCGGCGGCAGAAGCATGGGCGGCGGAGGAAGTATGTTCCGTTCAGTCAGCAGGGCGGCGCTGACTAGAACTACCGGTGTTGCAATCCAAGAACCCATCACTTCTTCGAGTTCTAACACCAGCACAACCACCACGACTGCTACTAGTCCTTCGGCTTCTAGGAATACCCAGAAACCCGGTTCGGTTAGTAACCTCTGTCTCTCTTCTCCTACCTCTCCGAATTGTGGGCACGTTTCTGCGAGTTCCGGCGGGCCCAACTGGCCCACTTCGCCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAATGCTGTTTCTGCTCTTCAACAGGTGTTCACTCCTACTCATCATCCCCAGTTCGTCCGGGATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTCTGCTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATGGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAATCCTTCTATACAGCTGAAGACAATAGTTCCCAGAGTTCATCTGAGGATTCTGATGATAACAGTACAGCAACAAACTTTTTGAGGTGGATCTTTCAAAATACCTATGGAAAGGTAATGGAGGTAATAGAGAACATTACCAAGCTTTTTGATCACTTGCTTCAACCTCAAGGCAGTGGCAAGACGAAGGCTGAAGCTGGTAATCTGTTTGAGGAGAGGCTGAGAACATCGGTCATGCTCTCTGTCATGGTCCTCTTGGTTGTGGTGGTTACTCGAACCCACAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

36.87

Weight (kDa)

4.83

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 12, 27, 30, 62, 255
AclWI GGATC 1 cut(s) 830
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 2 cut(s) 771, 945
AfaI GTAC 2 cut(s) 473, 799
AfiI CCNNNNNNNGG 2 cut(s) 230, 595
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 3 cut(s) 413, 830, 896
AhlI ACTAGT 1 cut(s) 149
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 6 cut(s) 335, 491, 727, 749, 877, 929
AluI AGCT 6 cut(s) 335, 491, 727, 749, 877, 929
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 830
AoxI GGCC 2 cut(s) 257, 266
ApaI GGGCCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 523
ApoI RAATTY 1 cut(s) 458
AsiGI ACCGGT 1 cut(s) 80
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 5 cut(s) 257, 258, 267, 365, 982
AsuC2I CCSGG 2 cut(s) 183, 452
AsuHPI GGTGA 1 cut(s) 730
AvaII GGWCC 2 cut(s) 365, 982
AxyI CCTNAGG 1 cut(s) 594
BaeGI GKGCMC 2 cut(s) 237, 261
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 759
BbvCI CCTCAGC 1 cut(s) 728
BbvI GCAGC 1 cut(s) 535
BccI CCATC 2 cut(s) 110, 553
BclI TGATCA 2 cut(s) 493, 883
BcnI CCSGG 2 cut(s) 183, 452
BcoDI GTCTC 1 cut(s) 209
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 3 cut(s) 72, 150, 165
BfoI RGCGCY 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 265
BisI GCNGC 4 cut(s) 13, 28, 63, 524
BlsI GCNGC 4 cut(s) 14, 29, 64, 525
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 183, 452
Bme18I GGWCC 2 cut(s) 365, 982
BmgT120I GGNCC 5 cut(s) 257, 258, 267, 365, 982
BmiI GGNNCC 3 cut(s) 259, 466, 564
BmrFI CCNGG 2 cut(s) 183, 452
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 685
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 759
BpmI CTGGAG 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 885
BpuMI CCSGG 2 cut(s) 183, 452
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 595
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 269, 442
Bse21I CCTNAGG 1 cut(s) 594
BseGI GGATG 5 cut(s) 436, 490, 564, 605, 700
BseLI CCNNNNNNNGG 2 cut(s) 230, 595
BseMII CTCAG 5 cut(s) 293, 608, 719, 768, 944
BseNI ACTGG 2 cut(s) 269, 442
BseRI GAGGAG 1 cut(s) 959
BseSI GKGCMC 2 cut(s) 237, 261
BseXI GCAGC 1 cut(s) 535
BseYI CCCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 542
BshFI GGCC 2 cut(s) 259, 268
BshTI ACCGGT 1 cut(s) 80
BsiSI CCGG 4 cut(s) 81, 183, 252, 451
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 2 cut(s) 230, 595
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 556
BsnI GGCC 2 cut(s) 259, 268
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 237, 261
Bsp143I GATC 3 cut(s) 493, 822, 883
BspACI CCGC 5 cut(s) 12, 27, 30, 62, 255
BspANI GGCC 2 cut(s) 259, 268
BspCNI CTCAG 5 cut(s) 292, 607, 720, 769, 945
BspLI GGNNCC 3 cut(s) 259, 466, 564
BspPI GGATC 1 cut(s) 830
BspQI GCTCTTC 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 269, 442
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 3 cut(s) 493, 822, 883
Bst4CI ACNGT 2 cut(s) 797, 1016
Bst6I CTCTTC 2 cut(s) 214, 414
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 5 cut(s) 279, 594, 728, 777, 953
BstF5I GGATG 5 cut(s) 436, 490, 564, 605, 700
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 496, 825, 886
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 3 cut(s) 493, 822, 883
BstMWI GCNNNNNNNGC 5 cut(s) 18, 27, 265, 274, 404
BstSCI CCNGG 2 cut(s) 181, 450
BstSLI GKGCMC 2 cut(s) 237, 261
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 1 cut(s) 822
BstYI RGATCY 1 cut(s) 822
Bsu36I CCTNAGG 1 cut(s) 594
BsuRI GGCC 2 cut(s) 259, 268
BtsCI GGATG 5 cut(s) 436, 490, 564, 605, 700
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 2 cut(s) 913, 1021
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 5 cut(s) 257, 258, 267, 365, 982
Csp6I GTAC 2 cut(s) 472, 798
CspAI ACCGGT 1 cut(s) 80
CspCI CAANNNNNGTGG 1 cut(s) 1001
CviAII CATG 4 cut(s) 22, 338, 967, 979
CviQI GTAC 2 cut(s) 472, 798
DdeI CTNAG 5 cut(s) 279, 594, 728, 777, 953
DpnI GATC 3 cut(s) 495, 824, 885
DpnII GATC 3 cut(s) 493, 822, 883
Eam1104I CTCTTC 2 cut(s) 214, 414
EarI CTCTTC 2 cut(s) 214, 414
EciI GGCGGA 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 365, 982
Eco57I CTGAAG 2 cut(s) 771, 945
Eco81I CCTNAGG 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 261
FaeI CATG 4 cut(s) 25, 341, 970, 982
FaiI YATR 8 cut(s) 23, 41, 339, 615, 744, 840, 968, 980
FaqI GGGAC 1 cut(s) 556
FatI CATG 4 cut(s) 21, 337, 966, 978
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 2 cut(s) 493, 883
Fnu4HI GCNGC 4 cut(s) 13, 28, 63, 524
FokI GGATG 5 cut(s) 423, 497, 571, 612, 707
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 13, 28, 63, 524
FspBI CTAG 3 cut(s) 72, 150, 165
GlaI GCGC 1 cut(s) 66
GluI GCNGC 4 cut(s) 13, 28, 63, 524
GsaI CCCAGC 1 cut(s) 592
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 2 cut(s) 259, 268
HapII CCGG 4 cut(s) 81, 183, 252, 451
HhaI GCGC 1 cut(s) 67
Hin1II CATG 4 cut(s) 25, 341, 970, 982
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 4 cut(s) 548, 641, 734, 782
HpaII CCGG 4 cut(s) 81, 183, 252, 451
HphI GGTGA 1 cut(s) 730
Hpy166II GTNNAC 3 cut(s) 310, 391, 423
Hpy188I TCNGA 8 cut(s) 225, 469, 498, 553, 654, 679, 778, 787
Hpy188III TCNNGA 2 cut(s) 347, 378
Hpy8I GTNNAC 3 cut(s) 310, 391, 423
HpyAV CCTTC 5 cut(s) 165, 384, 576, 748, 913
HpyCH4III ACNGT 2 cut(s) 797, 1016
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 89, 523, 634
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 27, 265, 274, 404
HpyF3I CTNAG 5 cut(s) 279, 594, 728, 777, 953
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 4 cut(s) 25, 341, 970, 982
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 2 cut(s) 493, 883
Kzo9I GATC 3 cut(s) 493, 822, 883
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 2 cut(s) 562, 724
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 1 cut(s) 685
MaeI CTAG 3 cut(s) 72, 150, 165
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 194, 1000
MalI GATC 3 cut(s) 495, 824, 885
MboI GATC 3 cut(s) 493, 822, 883
MboII GAAGA 6 cut(s) 102, 201, 332, 401, 525, 764
MflI RGATCY 1 cut(s) 822
MhlI GDGCHC 2 cut(s) 237, 261
MluCI AATT 3 cut(s) 226, 458, 583
MlyI GAGTC 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 749
MspI CCGG 4 cut(s) 81, 183, 252, 451
MspR9I CCNGG 2 cut(s) 183, 452
MwoI GCNNNNNNNGC 5 cut(s) 18, 27, 265, 274, 404
NciI CCSGG 2 cut(s) 183, 452
NdeII GATC 3 cut(s) 493, 822, 883
NlaIII CATG 4 cut(s) 25, 341, 970, 982
NlaIV GGNNCC 3 cut(s) 259, 466, 564
PciSI GCTCTTC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 548, 734, 782
PfoI TCCNGGA 1 cut(s) 450
PinAI ACCGGT 1 cut(s) 80
PkrI GCNGC 4 cut(s) 14, 29, 64, 525
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 259, 466, 564
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 5 cut(s) 257, 258, 267, 365, 982
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PsuI RGATCY 1 cut(s) 822
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 2 cut(s) 473, 799
RsaNI GTAC 2 cut(s) 472, 798
SapI GCTCTTC 1 cut(s) 414
SatI GCNGC 4 cut(s) 13, 28, 63, 524
Sau3AI GATC 3 cut(s) 493, 822, 883
Sau96I GGNCC 5 cut(s) 257, 258, 267, 365, 982
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 2 cut(s) 183, 452
SduI GDGCHC 2 cut(s) 237, 261
SfaNI GCATC 1 cut(s) 685
SfiI GGCCNNNNNGGCC 1 cut(s) 265
SinI GGWCC 2 cut(s) 365, 982
SmlI CTYRAG 1 cut(s) 900
SmoI CTYRAG 1 cut(s) 900
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 3 cut(s) 226, 458, 583
SsiI CCGC 5 cut(s) 12, 27, 30, 62, 255
SspMI CTAG 3 cut(s) 72, 150, 165
StyD4I CCNGG 2 cut(s) 181, 450
TaaI ACNGT 2 cut(s) 797, 1016
TaiI ACGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 113, 294, 1006
TaqII GACCGA 1 cut(s) 952
TasI AATT 3 cut(s) 226, 458, 583
TatI WGTACW 2 cut(s) 471, 797
TauI GCSGC 3 cut(s) 15, 30, 65
TfiI GAWTC 3 cut(s) 548, 734, 782
TscAI CASTG 2 cut(s) 913, 1021
TseI GCWGC 1 cut(s) 523
TspDTI ATGAA 5 cut(s) 399, 525, 657, 719, 762
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 913, 1021
VpaK11BI GGWCC 2 cut(s) 365, 982
XapI RAATTY 1 cut(s) 458
XspI CTAG 3 cut(s) 72, 150, 165
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.