Rmu_ssc0000323.1_g000004

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000323.1
OG0002211
Physical Location & Seq
Reverse (-)
16736 .. 17439
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000323.1_g000004.1.cds

Sequence Viewer

Length: 396 bp
atgttgagaaagctcatgggtttcttgatgacgttgttcttggacctgttccttctggagatgaagttcacaacgctgtttctggtgttcagtccaactcatcgcccccagtttatctgttataaatttggttccgagtacttggacaaggatgtagctgatctgattttgagtgcttctggttcggtgcagcgagtatcttcatttgggacagaatcagattggatagagccttttgtttacctttgtaattcccagcctcagggacgtcaaagaatcagattggagggtcatcttggttttggttttaaagaattgaatttggctttcattgtgttagataagcaattagttgggggagagttcgaacatggagaggcccatgtggaaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.99

Weight (kDa)

5.5

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AatII GACGTC 1 cut(s) 271
AcsI RAATTY 2 cut(s) 125, 319
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 319
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 2 cut(s) 13, 158
AluI AGCT 2 cut(s) 13, 158
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 2 cut(s) 125, 319
AspS9I GGNCC 2 cut(s) 43, 379
AsuII TTCGAA 1 cut(s) 366
AvaII GGWCC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmcAI AGTACT 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 43, 379
BmiI GGNNCC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 109
Bse21I CCTNAGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 209
BshFI GGCC 1 cut(s) 380
BslFI GGGAC 2 cut(s) 223, 279
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 2 cut(s) 223, 279
BsnI GGCC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 366
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 366
BsrI ACTGG 1 cut(s) 109
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 268
BstBI TTCGAA 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 380
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 43, 379
Csp6I GTAC 1 cut(s) 139
CviAII CATG 3 cut(s) 16, 371, 383
CviJI RGCY 6 cut(s) 13, 158, 232, 259, 326, 380
CviKI_1 RGCY 6 cut(s) 13, 158, 232, 259, 326, 380
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 261
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraI TTTAAA 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 261
FaeI CATG 3 cut(s) 19, 374, 386
FaiI YATR 4 cut(s) 17, 123, 372, 384
FaqI GGGAC 2 cut(s) 223, 279
FatI CATG 3 cut(s) 15, 370, 382
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 3 cut(s) 19, 374, 386
HinfI GANTC 2 cut(s) 215, 276
Hpy166II GTNNAC 2 cut(s) 69, 241
Hpy188I TCNGA 4 cut(s) 136, 165, 220, 281
Hpy188III TCNNGA 2 cut(s) 25, 56
Hpy8I GTNNAC 2 cut(s) 69, 241
HpyAV CCTTC 2 cut(s) 62, 383
HpyCH4IV ACGT 2 cut(s) 32, 268
HpyCH4V TGCA 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 2 cut(s) 32, 268
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 3 cut(s) 19, 374, 386
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 41, 59, 68, 122, 165, 248, 269
Lsp1109I GCAGC 1 cut(s) 202
MaeII ACGT 2 cut(s) 32, 268
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 192
MluCI AATT 5 cut(s) 125, 250, 314, 319, 347
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 3 cut(s) 270, 280, 370
MseI TTAA 1 cut(s) 309
NdeII GATC 1 cut(s) 160
NlaIII CATG 3 cut(s) 19, 374, 386
NlaIV GGNNCC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 366
PfeI GAWTC 2 cut(s) 215, 276
PkrI GCNGC 1 cut(s) 192
PsiI TTATAA 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 43, 379
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 43, 379
ScaI AGTACT 1 cut(s) 140
SetI ASST 7 cut(s) 15, 35, 48, 160, 246, 271, 394
SfuI TTCGAA 1 cut(s) 366
SinI GGWCC 1 cut(s) 43
Sse9I AATT 5 cut(s) 125, 250, 314, 319, 347
TaiI ACGT 2 cut(s) 35, 271
TaqI TCGA 1 cut(s) 366
TasI AATT 5 cut(s) 125, 250, 314, 319, 347
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 2 cut(s) 215, 276
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 77, 192, 319
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 2 cut(s) 125, 319
ZraI GACGTC 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.