Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Forward (+)

56645992 .. 56647264

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG416500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCAAGTCAACTCACTCCAACACCCTCGTTTCCAAGAGGAGGCTTTCGGGTTGCTCCCAACCCGATATCGAGGATTCGGGCGGGTTCAACAATACCTAGAAGAAGAGTCGGTTGGCTGAGTCATTTTTGTACCGCTTCAGGAGGAAGAAGGGCATGTGCGACACCGATTTTACTTCCGCGTTCCAGCAGGTCCAGCTGGCCCACTTCACCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACACAAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTATGTTTACCTTTGTAATTCCCAGCCTCAGGGACGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.06

Weight (kDa)

9.35

Isoelectric Point (pI)

63.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	180
AccII	CGCG	1 cut(s)	181
AciI	CCGC	3 cut(s)	83, 135, 179
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	41, 420
AgsI	TTSAA	2 cut(s)	90, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	2 cut(s)	198, 269
AluI	AGCT	2 cut(s)	198, 269
AoxI	GGCC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	192, 201, 299
AsuHPI	GGTGA	1 cut(s)	201
AvaII	GGWCC	2 cut(s)	192, 299
AxyI	CCTNAGG	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BccI	CCATC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	192, 299
BmgT120I	GGNCC	3 cut(s)	192, 201, 299
BmiI	GGNNCC	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 420
Bse21I	CCTNAGG	1 cut(s)	419
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	41, 420
BseMII	CTCAG	3 cut(s)	110, 227, 433
BseRI	GAGGAG	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	381, 437
BslI	CCNNNNNNNGG	2 cut(s)	41, 420
BsmFI	GGGAC	2 cut(s)	381, 437
BsnI	GGCC	1 cut(s)	202
BspACI	CCGC	3 cut(s)	83, 135, 179
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	3 cut(s)	111, 226, 432
BspFNI	CGCG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	389
BspMI	ACCTGC	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	348
BssNI	GRCGYC	1 cut(s)	426
Bst6I	CTCTTC	2 cut(s)	100, 348
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	3 cut(s)	119, 213, 419
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 338
BstNSI	RCATGY	1 cut(s)	159
BstUI	CGCG	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	389
BveI	ACCTGC	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	192, 201, 299
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	2 cut(s)	156, 272
CviJI	RGCY	8 cut(s)	45, 118, 198, 202, 269, 390, 417, 445
CviKI_1	RGCY	8 cut(s)	45, 118, 198, 202, 269, 390, 417, 445
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	3 cut(s)	119, 213, 419
Eam1104I	CTCTTC	2 cut(s)	100, 348
EarI	CTCTTC	2 cut(s)	100, 348
Eco32I	GATATC	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	192, 299
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	69
FaeI	CATG	2 cut(s)	159, 275
FaiI	YATR	4 cut(s)	157, 273, 395, 440
FaqI	GGGAC	2 cut(s)	381, 437
FatI	CATG	2 cut(s)	155, 271
FauI	CCCGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	396
FspBI	CTAG	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	159, 275
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HinfI	GANTC	5 cut(s)	76, 108, 121, 373, 466
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	4 cut(s)	11, 244, 325, 399
Hpy188I	TCNGA	2 cut(s)	378, 479
Hpy188III	TCNNGA	3 cut(s)	141, 281, 312
Hpy8I	GTNNAC	4 cut(s)	11, 244, 325, 399
HpyAV	CCTTC	2 cut(s)	144, 318
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 338
HpyF3I	CTNAG	3 cut(s)	119, 213, 419
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	159, 275
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	61, 387
LpnPI	CCDG	9 cut(s)	126, 175, 184, 199, 208, 297, 315, 406, 427
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	426
MboII	GAAGA	6 cut(s)	114, 117, 159, 266, 335, 350
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	3 cut(s)	117, 130, 475
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	32, 35, 37, 66, 137, 222, 428, 435
MspA1I	CMGCKG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	195, 338
NlaIII	CATG	2 cut(s)	159, 275
NlaIV	GGNNCC	1 cut(s)	389
NspI	RCATGY	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	76, 373
PleI	GAGTC	3 cut(s)	116, 129, 474
PpsI	GAGTC	3 cut(s)	116, 129, 474
PspFI	CCCAGC	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	3 cut(s)	192, 201, 299
PvuII	CAGCTG	1 cut(s)	198
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	348
Sau96I	GGNCC	3 cut(s)	192, 201, 299
SchI	GAGTC	3 cut(s)	117, 130, 475
SetI	ASST	8 cut(s)	100, 194, 200, 214, 271, 304, 404, 429
SinI	GGWCC	2 cut(s)	192, 299
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	83, 135, 179
SspMI	CTAG	1 cut(s)	99
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	71, 228
TasI	AATT	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	76, 373
TspDTI	ATGAA	2 cut(s)	333, 350
VpaK11BI	GGWCC	2 cut(s)	192, 299
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	1 cut(s)	99
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.