Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

17931772 .. 17933794

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTTTGGTGGAAGAAGCATGGGCGGAGGAGGTGGAGGAGGAAGCGTGTTTAGGACTGTGAGTAGGGCAGCAGTCACCAGAACTGTTGCTGGTGGCCCACCAATTCAAGAACCCCTTTCTTCTTCTTCTTCCAGTTCTTCTGCTGCTGCTAATACCACCACCACCACGTCCACTTCTAGGCACACCCAGAAGCCCAGTTCTTCCCACAACCTCTCTCTCTCCTCACCCACCTCACCTTTTGCCTCGTGCAATATTCCTCTGGCTTCCAATTGTGGCACGCCGGGCTGGCCTTCTTCTCCTCGCTTTGATGATTTTGATTGGGTGACTCTGGATAATGGCATTAGCAGTGAGGATGATGAGAGAGTTTCACGCGGGTTTCTTGATGATTTTGTTCTTGGACCTGTTCCTTCCAAGGATGAAGTTCACAGTGCTGTCTCTGCCCTTCAACAGGTTATCAGTCCCTTCATCAGGGATAAGTTTGGTTCTGAGTCAGACAGCGCTGTGGATGATCAAATTACAAGGGCTTCTGCTGGGTTTGTGCACCCAGCATCTTCAGCTGGGTCAGAATTAGATCGGATGGAGCCCTCTGCCCATTTTTCTAATAATTCAAAGATGTTGCAGTCTTATGGTTCTGAAAGAGTTTATGATGCTTTCCATCTCTTGCAGACCGAGTCTTCTGTGCAGAGAATGGTGATCTCCTTGTCATCTGATAGGGCGGTTTGGGATGCGGTAATGAACAATGAGGTGGTGCGCGAGCTCCGGGAATCTTTCTACGCAGATGAAGACAATAAATCCGAGAGTCCAGATGAGAATTCTGATGATAACGATAAAACAACAAACATTGTCAAGTGGATCTTTCAAAATACCATGGCAAAAGTCATGGAAGCAATCGAGAAAATTACGAAGGTCATGGGCGACTTATTTCAACCTCCAAGCAGGGAAAACGCGAAAGCAGAACCCAGCAATCGCTTTGAGGACAGGCTGAAAAAATCGTTCATGCTCTCCGTTGTGGTCCTGTTGATTGTGGTGGTTACTCGAACCCACAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

37.92

Weight (kDa)

5.17

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	372, 753, 947
AciI	CCGC	4 cut(s)	24, 372, 716, 728
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	537
AfeI	AGCGCT	1 cut(s)	499
AfiI	CCNNNNNNNGG	3 cut(s)	177, 448, 468
AgsI	TTSAA	5 cut(s)	107, 446, 609, 860, 926
AjiI	CACGTC	1 cut(s)	168
AluBI	AGCT	2 cut(s)	557, 757
AluI	AGCT	2 cut(s)	557, 757
Alw21I	GWGCWC	2 cut(s)	543, 759
Alw26I	GTCTC	1 cut(s)	439
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	860
Aor51HI	AGCGCT	1 cut(s)	499
AoxI	GGCC	2 cut(s)	94, 287
ApaLI	GTGCAC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	68, 143, 146
ApoI	RAATTY	1 cut(s)	811
AspLEI	GCGC	2 cut(s)	500, 753
AspS9I	GGNCC	3 cut(s)	95, 398, 1012
AsuC2I	CCSGG	2 cut(s)	282, 761
AsuHPI	GGTGA	5 cut(s)	67, 216, 225, 334, 703
AvaII	GGWCC	2 cut(s)	398, 1012
BaeGI	GKGCMC	1 cut(s)	543
BanII	GRGCYC	2 cut(s)	585, 759
BauI	CACGAG	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	666, 789
Bbv12I	GWGCWC	2 cut(s)	543, 759
BbvI	GCAGC	3 cut(s)	80, 130, 133
BccI	CCATC	2 cut(s)	571, 663
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	2 cut(s)	282, 761
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	501
BglI	GCCNNNNNGGC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	69, 144, 147
BlsI	GCNGC	3 cut(s)	70, 145, 148
Bme1390I	CCNGG	2 cut(s)	282, 761
Bme18I	GGWCC	2 cut(s)	398, 1012
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	95, 398, 1012
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	282, 761
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	3 cut(s)	557, 637, 715
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	2 cut(s)	666, 789
BpuMI	CCSGG	2 cut(s)	282, 761
BsaJI	CCNNGG	2 cut(s)	411, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 448, 468
Bse1I	ACTGG	2 cut(s)	132, 195
BseDI	CCNNGG	2 cut(s)	411, 867
BseGI	GGATG	5 cut(s)	358, 421, 511, 582, 730
BseLI	CCNNNNNNNGG	3 cut(s)	177, 448, 468
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	132, 195
BseRI	GAGGAG	4 cut(s)	42, 51, 211, 288
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	3 cut(s)	80, 130, 133
BseYI	CCCAGC	4 cut(s)	530, 544, 557, 959
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	3 cut(s)	372, 753, 947
BshFI	GGCC	2 cut(s)	96, 289
BsiHKAI	GWGCWC	2 cut(s)	543, 759
BsiSI	CCGG	2 cut(s)	281, 760
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	177, 448, 468
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	96, 289
Bsp1286I	GDGCHC	3 cut(s)	543, 585, 759
Bsp143I	GATC	4 cut(s)	508, 571, 693, 852
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	4 cut(s)	24, 372, 716, 728
BspANI	GGCC	2 cut(s)	96, 289
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	3 cut(s)	372, 753, 947
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	132, 195
BssECI	CCNNGG	2 cut(s)	411, 867
BssMI	GATC	4 cut(s)	508, 571, 693, 852
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	411, 867
Bst2BI	CACGAG	1 cut(s)	244
Bst4CI	ACNGT	3 cut(s)	58, 85, 428
BstC8I	GCNNGC	3 cut(s)	278, 287, 755
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	1 cut(s)	867
BstENI	CCTNNNNNAGG	2 cut(s)	446, 466
BstF5I	GGATG	5 cut(s)	358, 421, 511, 582, 730
BstFNI	CGCG	3 cut(s)	372, 753, 947
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	2 cut(s)	500, 753
BstKTI	GATC	4 cut(s)	511, 574, 696, 855
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	4 cut(s)	508, 571, 693, 852
BstMWI	GCNNNNNNNGC	4 cut(s)	282, 286, 437, 554
BstSCI	CCNGG	2 cut(s)	280, 759
BstSLI	GKGCMC	1 cut(s)	543
BstUI	CGCG	3 cut(s)	372, 753, 947
BstV1I	GCAGC	3 cut(s)	80, 130, 133
BstV2I	GAAGAC	2 cut(s)	666, 789
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
BsuRI	GGCC	2 cut(s)	96, 289
BtgI	CCRYGG	1 cut(s)	867
BtrI	CACGTC	1 cut(s)	168
BtsCI	GGATG	5 cut(s)	358, 421, 511, 582, 730
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	352, 433
Cac8I	GCNNGC	3 cut(s)	278, 287, 755
CfoI	GCGC	2 cut(s)	500, 753
Cfr13I	GGNCC	3 cut(s)	95, 398, 1012
CspCI	CAANNNNNGTGG	1 cut(s)	1031
CviAII	CATG	5 cut(s)	19, 868, 880, 910, 997
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	4 cut(s)	510, 573, 695, 854
DpnII	GATC	4 cut(s)	508, 571, 693, 852
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	411, 867
Eco24I	GRGCYC	2 cut(s)	585, 759
Eco47I	GGWCC	2 cut(s)	398, 1012
Eco47III	AGCGCT	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	757
EcoNI	CCTNNNNNAGG	2 cut(s)	446, 466
EcoRI	GAATTC	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	411, 867
EcoT38I	GRGCYC	2 cut(s)	585, 759
ErhI	CCWWGG	2 cut(s)	411, 867
FaeI	CATG	5 cut(s)	22, 871, 883, 913, 1000
FaiI	YATR	7 cut(s)	20, 627, 645, 869, 881, 911, 998
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 839, 871
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	18, 867, 879, 909, 996
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	69, 144, 147
FokI	GGATG	5 cut(s)	365, 428, 518, 589, 737
FriOI	GRGCYC	2 cut(s)	585, 759
Fsp4HI	GCNGC	3 cut(s)	69, 144, 147
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	2 cut(s)	499, 752
GluI	GCNGC	3 cut(s)	69, 144, 147
GsaI	CCCAGC	4 cut(s)	534, 548, 561, 963
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	96, 289
HapII	CCGG	2 cut(s)	281, 760
HhaI	GCGC	2 cut(s)	500, 753
Hin1II	CATG	5 cut(s)	22, 871, 883, 913, 1000
Hin6I	GCGC	2 cut(s)	498, 751
HinP1I	GCGC	2 cut(s)	498, 751
HinfI	GANTC	5 cut(s)	325, 488, 671, 764, 799
HpaII	CCGG	2 cut(s)	281, 760
HphI	GGTGA	5 cut(s)	67, 216, 225, 334, 703
Hpy166II	GTNNAC	3 cut(s)	171, 424, 541
Hpy188I	TCNGA	8 cut(s)	487, 493, 565, 576, 634, 709, 796, 817
Hpy188III	TCNNGA	5 cut(s)	107, 329, 380, 803, 892
Hpy8I	GTNNAC	3 cut(s)	171, 424, 541
HpyAV	CCTTC	5 cut(s)	300, 417, 452, 472, 898
HpyCH4III	ACNGT	3 cut(s)	58, 85, 428
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	249, 541, 619, 664, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	282, 286, 437, 554
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	5 cut(s)	22, 871, 883, 913, 1000
HspAI	GCGC	2 cut(s)	498, 751
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	508, 571, 693, 852
LmnI	GCTCC	2 cut(s)	580, 762
Lsp1109I	GCAGC	3 cut(s)	80, 130, 133
LweI	GCATC	3 cut(s)	557, 637, 715
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	3 cut(s)	73, 322, 1030
MalI	GATC	4 cut(s)	510, 573, 695, 854
MboI	GATC	4 cut(s)	508, 571, 693, 852
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	1 cut(s)	852
MhlI	GDGCHC	3 cut(s)	543, 585, 759
MluCI	AATT	7 cut(s)	102, 268, 513, 566, 604, 811, 897
MlyI	GAGTC	4 cut(s)	319, 497, 680, 808
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	281, 760
MspR9I	CCNGG	2 cut(s)	282, 761
MunI	CAATTG	1 cut(s)	268
MvnI	CGCG	3 cut(s)	372, 753, 947
MwoI	GCNNNNNNNGC	4 cut(s)	282, 286, 437, 554
NciI	CCSGG	2 cut(s)	282, 761
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	4 cut(s)	508, 571, 693, 852
NlaIII	CATG	5 cut(s)	22, 871, 883, 913, 1000
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	73, 322
PfeI	GAWTC	1 cut(s)	764
PflFI	GACNNNGTC	1 cut(s)	670
PfoI	TCCNGGA	1 cut(s)	759
PkrI	GCNGC	3 cut(s)	70, 145, 148
PleI	GAGTC	4 cut(s)	319, 496, 679, 807
PpsI	GAGTC	4 cut(s)	319, 496, 679, 807
Psp124BI	GAGCTC	1 cut(s)	759
PspFI	CCCAGC	4 cut(s)	530, 544, 557, 959
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	95, 398, 1012
PsuI	RGATCY	1 cut(s)	852
PsyI	GACNNNGTC	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	759
SatI	GCNGC	3 cut(s)	69, 144, 147
Sau3AI	GATC	4 cut(s)	508, 571, 693, 852
Sau96I	GGNCC	3 cut(s)	95, 398, 1012
SchI	GAGTC	4 cut(s)	319, 497, 680, 808
ScrFI	CCNGG	2 cut(s)	282, 761
SduI	GDGCHC	3 cut(s)	543, 585, 759
SfaNI	GCATC	3 cut(s)	557, 637, 715
SinI	GGWCC	2 cut(s)	398, 1012
Sse9I	AATT	7 cut(s)	102, 268, 513, 566, 604, 811, 897
SsiI	CCGC	4 cut(s)	24, 372, 716, 728
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	177
SstI	GAGCTC	1 cut(s)	759
StyD4I	CCNGG	2 cut(s)	280, 759
StyI	CCWWGG	2 cut(s)	411, 867
TaaI	ACNGT	3 cut(s)	58, 85, 428
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	2 cut(s)	891, 1036
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	7 cut(s)	102, 268, 513, 566, 604, 811, 897
TfiI	GAWTC	1 cut(s)	764
TscAI	CASTG	2 cut(s)	352, 433
TseFI	GTSAC	2 cut(s)	73, 322
TseI	GCWGC	3 cut(s)	68, 143, 146
Tsp45I	GTSAC	2 cut(s)	73, 322
TspDTI	ATGAA	5 cut(s)	432, 454, 749, 795, 985
TspGWI	ACGGA	1 cut(s)	994
TspRI	CASTG	2 cut(s)	352, 433
Tth111I	GACNNNGTC	1 cut(s)	670
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	398, 1012
XagI	CCTNNNNNAGG	2 cut(s)	446, 466
XapI	RAATTY	1 cut(s)	811
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.