Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

47467020 .. 47469555

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGCCCTGTTCCTTCTGGAGATGAAGTTCACAACGCTTTTGGTTTATATTGACATTGCATTTCACGCCATAACTGTCATCATTCATGAGATGGGTGTTCAGTCCAACTCATCACCCCCAGTTTATCTGTTAAAATTTGGTTACGAGTACTTGGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTGGGATAGAATCAGATTGGATAGAGCCTTCTGTTTACCTTTGTAATTCCCAGCCTCAGGGACGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATTTGTTCAGAGAATAGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTTAGGGAATCCTTCTATGCAGTGGTTTTATGGCCTCCTTCAGCAGCTCCGGTGTTATACCCTATGCCAATATATGGGGAGGCATCAAATCATAATCACGGTACTTTCTGCAGAACTGTTGGTGGGAAAAAGGAAGAGGAGAGATCAAATATTTTAGTCGATTTTGATCGACTTTTGGAGGAAGGTTTAGGTTTGTTTTGGGAGAGGTTGCTTGGTTTTCAACAGAGGAACAGTACATTTGAATTTCATGTTATTTGTGGATCAGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

27.04

Weight (kDa)

5.15

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	515
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	2 cut(s)	173, 683
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	3 cut(s)	188, 544, 676
AfiI	CCNNNNNNNGG	2 cut(s)	310, 515
AgsI	TTSAA	2 cut(s)	662, 683
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	5 cut(s)	13, 206, 442, 488, 707
AluI	AGCT	5 cut(s)	13, 206, 442, 488, 707
AlwI	GGATC	1 cut(s)	709
AoxI	GGCC	2 cut(s)	42, 473
ApeKI	GCWGC	2 cut(s)	238, 485
ApoI	RAATTY	2 cut(s)	173, 683
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	144, 445
AxyI	CCTNAGG	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	250, 497
BccI	CCATC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	208
BfaI	CTAG	1 cut(s)	712
BfmI	CTRYAG	1 cut(s)	550
BisI	GCNGC	2 cut(s)	239, 486
BlsI	GCNGC	2 cut(s)	240, 487
BmcAI	AGTACT	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	400, 533
BmuI	ACTGGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 515
Bse1I	ACTGG	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	606
BseGI	GGATG	2 cut(s)	205, 415
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	2 cut(s)	310, 515
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	250, 497
BseYI	CCCAGC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	44, 475
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	310, 515
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	44, 475
Bsp143I	GATC	4 cut(s)	208, 584, 607, 701
BspANI	GGCC	2 cut(s)	44, 475
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	554
BspPI	GGATC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	4 cut(s)	208, 584, 607, 701
BssNI	GRCGYC	1 cut(s)	316
Bst4CI	ACNGT	4 cut(s)	115, 542, 559, 674
Bst6I	CTCTTC	1 cut(s)	570
BstACI	GRCGYC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	309, 443
BstF5I	GGATG	2 cut(s)	205, 415
BstKTI	GATC	4 cut(s)	211, 587, 610, 704
BstMBI	GATC	4 cut(s)	208, 584, 607, 701
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	550
BstV1I	GCAGC	2 cut(s)	250, 497
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	44, 475
BtsCI	GGATG	2 cut(s)	205, 415
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	3 cut(s)	187, 543, 675
CviAII	CATG	3 cut(s)	16, 125, 689
CviQI	GTAC	3 cut(s)	187, 543, 675
DdeI	CTNAG	2 cut(s)	309, 443
DpnI	GATC	4 cut(s)	210, 586, 609, 703
DpnII	GATC	4 cut(s)	208, 584, 607, 701
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco57I	CTGAAG	1 cut(s)	465
Eco81I	CCTNAGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	19, 128, 692
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	3 cut(s)	15, 124, 688
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	239, 486
FokI	GGATG	2 cut(s)	212, 422
Fsp4HI	GCNGC	2 cut(s)	239, 486
FspBI	CTAG	1 cut(s)	712
GluI	GCNGC	2 cut(s)	239, 486
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	44, 475
HapII	CCGG	1 cut(s)	491
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	19, 128, 692
HinfI	GANTC	3 cut(s)	263, 356, 449
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	2 cut(s)	144, 445
Hpy166II	GTNNAC	2 cut(s)	69, 289
Hpy188I	TCNGA	4 cut(s)	213, 268, 369, 394
Hpy188III	TCNNGA	3 cut(s)	25, 56, 125
Hpy8I	GTNNAC	2 cut(s)	69, 289
HpyAV	CCTTC	5 cut(s)	62, 291, 463, 489, 617
HpyCH4III	ACNGT	4 cut(s)	115, 542, 559, 674
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	98, 238, 349, 461, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	309, 443
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	19, 128, 692
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	208, 584, 607, 701
LmnI	GCTCC	2 cut(s)	439, 493
LpnPI	CCDG	7 cut(s)	41, 59, 171, 213, 296, 317, 504
Lsp1109I	GCAGC	2 cut(s)	250, 497
LweI	GCATC	2 cut(s)	400, 533
MaeI	CTAG	1 cut(s)	712
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	210, 586, 609, 703
MboI	GATC	4 cut(s)	208, 584, 607, 701
MboII	GAAGA	2 cut(s)	240, 587
MluCI	AATT	3 cut(s)	173, 298, 683
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	168
MseI	TTAA	1 cut(s)	170
MspI	CCGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	4 cut(s)	208, 584, 607, 701
NlaIII	CATG	3 cut(s)	19, 128, 692
PagI	TCATGA	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	263, 449
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	240, 487
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	188, 544, 676
RsaNI	GTAC	3 cut(s)	187, 543, 675
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	239, 486
Sau3AI	GATC	4 cut(s)	208, 584, 607, 701
Sau96I	GGNCC	1 cut(s)	43
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	365
SfaNI	GCATC	2 cut(s)	400, 533
SfcI	CTRYAG	1 cut(s)	550
Sse9I	AATT	3 cut(s)	173, 298, 683
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	1 cut(s)	712
TaaI	ACNGT	4 cut(s)	115, 542, 559, 674
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	600, 610
TasI	AATT	3 cut(s)	173, 298, 683
TatI	WGTACW	2 cut(s)	186, 674
TfiI	GAWTC	2 cut(s)	263, 449
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	2 cut(s)	238, 485
TspDTI	ATGAA	6 cut(s)	77, 113, 240, 372, 434, 677
TspRI	CASTG	1 cut(s)	468
Van91I	CCANNNNNTGG	1 cut(s)	515
XapI	RAATTY	2 cut(s)	173, 683
XspI	CTAG	1 cut(s)	712
ZraI	GACGTC	1 cut(s)	317
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.