Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Forward (+)

13510950 .. 13512550

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGAGCGTTTCCTTCCAACGTCAAGTTAACTCACTCCAACACCCTTGTTTCCAAGAGGAGGCTTTCAGGAGGAAGAAGGGCCTGTGCGACATCGATTTTACTTCCGCAGTATGGAAATTCTTGGCTTTGGGACTGTTTGTTTCATCTTTTGGGAAATTGGGTTTGGGTTCACTTTGATGATTTCGATTGGGTTTTTGTGGACAGGAGTGAAGATGTTGAGAAAGCTCATCGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCAGTCCAACTCATCACCCCCAGTTTATCTGTTATAAATTTGGTTCCGAGTACTTAGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGCCTCAGGGACGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATTTGTTCAGAGAATAGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTAAGGGAATCCTTCTATGCAGGTTGGCATGAATTTCAAGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.63

Weight (kDa)

5.71

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AatII	GACGTC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	557
AciI	CCGC	1 cut(s)	107
AcsI	RAATTY	3 cut(s)	118, 350, 578
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	60, 113
AgsI	TTSAA	2 cut(s)	305, 584
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	227, 383, 547
AluI	AGCT	3 cut(s)	227, 383, 547
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	3 cut(s)	118, 350, 578
AspS9I	GGNCC	2 cut(s)	81, 257
AsuHPI	GGTGA	2 cut(s)	320, 550
AvaII	GGWCC	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	414
BclI	TGATCA	1 cut(s)	385
BfmI	CTRYAG	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	557
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	81, 257
BmiI	GGNNCC	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 113
Bse1I	ACTGG	1 cut(s)	334
Bse21I	CCTNAGG	1 cut(s)	414
BseCI	ATCGAT	1 cut(s)	95
BseGI	GGATG	2 cut(s)	382, 520
BseLI	CCNNNNNNNGG	2 cut(s)	60, 113
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	146, 432
BslI	CCNNNNNNNGG	2 cut(s)	60, 113
BsmFI	GGGAC	2 cut(s)	146, 432
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	421
BstDEI	CTNAG	3 cut(s)	367, 414, 548
BstF5I	GGATG	2 cut(s)	382, 520
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	590
Bsu15I	ATCGAT	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	382, 520
BveI	ACCTGC	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	81, 257
ClaI	ATCGAT	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	1 cut(s)	575
CviJI	RGCY	7 cut(s)	64, 83, 127, 227, 383, 440, 547
CviKI_1	RGCY	7 cut(s)	64, 83, 127, 227, 383, 440, 547
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	3 cut(s)	367, 414, 548
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	81
FaeI	CATG	1 cut(s)	578
FaiI	YATR	6 cut(s)	114, 348, 435, 564, 576, 592
FaqI	GGGAC	2 cut(s)	146, 432
FatI	CATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	385
FokI	GGATG	2 cut(s)	389, 527
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	461, 554
HpaI	GTTAAC	1 cut(s)	30
HphI	GGTGA	2 cut(s)	320, 550
Hpy166II	GTNNAC	4 cut(s)	30, 172, 202, 283
Hpy188I	TCNGA	4 cut(s)	361, 390, 474, 499
Hpy188III	TCNNGA	3 cut(s)	69, 239, 270
Hpy8I	GTNNAC	4 cut(s)	30, 172, 202, 283
HpyAV	CCTTC	4 cut(s)	24, 72, 276, 568
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	2 cut(s)	21, 421
HpyCH4V	TGCA	2 cut(s)	454, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	3 cut(s)	367, 414, 548
HpySE526I	ACGT	2 cut(s)	21, 421
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	385
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	544
LweI	GCATC	1 cut(s)	505
MaeII	ACGT	2 cut(s)	21, 421
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	3 cut(s)	87, 224, 293
MluCI	AATT	4 cut(s)	118, 157, 350, 578
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	3 cut(s)	42, 63, 344
MnlI	CCTC	7 cut(s)	51, 54, 65, 423, 430, 526, 534
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	554
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PsiI	TTATAA	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	81, 257
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	2 cut(s)	81, 257
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	470
SetI	ASST	9 cut(s)	24, 229, 262, 312, 385, 424, 537, 549, 571
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	118, 157, 350, 578
SsiI	CCGC	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	2 cut(s)	24, 424
TaqI	TCGA	2 cut(s)	95, 186
TasI	AATT	4 cut(s)	118, 157, 350, 578
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TspDTI	ATGAA	5 cut(s)	134, 291, 477, 539, 591
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	3 cut(s)	118, 350, 578
ZraI	GACGTC	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.