Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

31962679 .. 31965537

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1251500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTTTGGTGGGAGAAGCATGGGCGGAGGAGGTGGAGGAGGAAGCATGTTTAAGGCTGTGAGTAGGGCAGCAGTCACCAGAACTATTGCTGGTGGTCCACCGATTCAAGAACCCCTATCTTCTTCTTCCAGTTCTGCTGCTGCTAATACCACCACCACAAATACTACCGCCACCTCCACTTCTAGGCACAACCAGAAGCCCAGTTCTTCCCACAACCTCTCTCTCTCCTCACCCACTTCTCCTTTTTCCTCATGCAATATTCCTCTGGCTTCCAATTGTGGGACATCCAGTTGGCCTTCTTCCCCTCGCTTTGATGATTTTGATTGGGTGACTGTGGATAATGGGGTTAGCAGTGAGGATGATGAGAGACTTTCACATGGGTTAATGGATGATTTTGTTCTTGGACCTGTTCCTTCCAAGCATGAAGTTCACAATGCTGTCTCTGCCCTTCATCAGGTTTTCAGTCCCTTCATCAGGGATAAGTTTGGTTCTAAGTCAGACAGAGATGTGGATGATCAAATTACAAGTCCTGCTGGGTTTGTGCACCCAGCACCTTCAGCTGGGTCAGAATTAGATTGGATGGAGCCTTCTGCCTATCTTTCTAATAATTCAAAAATGTTGCAGTCTCACGGTGTTGAGAGAGTTTATGATGCTTTCCATCTCTTGCAGACTGAGTCTTCTGTGCAGAGAATGGTGATGGCATTGTCATCTGATACAGCGGTTTGGGATGCTGTGATGAACAATGAGGTGGTGCGCGAGCTCCGCGAGTCTTTCTATGCAGATGAAGACAATAGCTCCGAGAGTTCACAAGAGAATTCTGATGATAACAACGATAAAGCTACAAACATTGTGAAGTGGATCTTTCAAAATACCATGGCAAAAGTCATGGAAGCAGTCGAGAAAATTACAAAGGTCATGGGCGGCTTCTTTCAACCTCCAAGCAGTGAAAACGCGAAAGCAGAAGCCAGCAATCGCTTTGAGGACAAGCTGAAAATATCGTTCATGCTCTCTGTTGTGGTCCTGTTGATAGTGGTGGTTACTCGAAGCCACAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.02

Weight (kDa)

5.2

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	756, 765, 953
AciI	CCGC	5 cut(s)	24, 168, 719, 763, 921
AclWI	GGATC	1 cut(s)	866
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	540
AfiI	CCNNNNNNNGG	5 cut(s)	183, 279, 454, 474, 560
AgsI	TTSAA	4 cut(s)	107, 612, 866, 932
AluBI	AGCT	5 cut(s)	560, 760, 795, 839, 988
AluI	AGCT	5 cut(s)	560, 760, 795, 839, 988
Alw21I	GWGCWC	2 cut(s)	546, 762
Alw26I	GTCTC	3 cut(s)	361, 445, 630
Alw44I	GTGCAC	1 cut(s)	542
AlwI	GGATC	1 cut(s)	866
AoxI	GGCC	1 cut(s)	293
ApaLI	GTGCAC	1 cut(s)	542
ApeKI	GCWGC	3 cut(s)	68, 137, 140
ApoI	RAATTY	1 cut(s)	814
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	3 cut(s)	95, 404, 1018
AsuHPI	GGTGA	4 cut(s)	67, 222, 340, 706
AvaII	GGWCC	3 cut(s)	95, 404, 1018
BaeGI	GKGCMC	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	705, 738
BanII	GRGCYC	1 cut(s)	762
BbsI	GAAGAC	2 cut(s)	669, 792
Bbv12I	GWGCWC	2 cut(s)	546, 762
BbvI	GCAGC	3 cut(s)	80, 124, 127
BccI	CCATC	3 cut(s)	574, 666, 691
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	361, 445, 630
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	4 cut(s)	69, 138, 141, 922
BlsI	GCNGC	4 cut(s)	70, 139, 142, 923
Bme18I	GGWCC	3 cut(s)	95, 404, 1018
BmgT120I	GGNCC	3 cut(s)	95, 404, 1018
BmiI	GGNNCC	1 cut(s)	585
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	640, 718
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	2 cut(s)	669, 792
BsaJI	CCNNGG	1 cut(s)	873
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	5 cut(s)	183, 279, 454, 474, 560
Bse1I	ACTGG	3 cut(s)	129, 201, 288
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	6 cut(s)	284, 364, 394, 517, 585, 733
BseLI	CCNNNNNNNGG	5 cut(s)	183, 279, 454, 474, 560
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	3 cut(s)	129, 201, 288
BseRI	GAGGAG	3 cut(s)	42, 51, 217
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	80, 124, 127
BseYI	CCCAGC	3 cut(s)	533, 547, 560
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	3 cut(s)	756, 765, 953
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	546, 762
BslFI	GGGAC	2 cut(s)	295, 450
BslI	CCNNNNNNNGG	5 cut(s)	183, 279, 454, 474, 560
BsmAI	GTCTC	3 cut(s)	361, 445, 630
BsmFI	GGGAC	2 cut(s)	295, 450
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	546, 762
Bsp143I	GATC	2 cut(s)	514, 858
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	5 cut(s)	24, 168, 719, 763, 921
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	664
BspFNI	CGCG	3 cut(s)	756, 765, 953
BspLI	GGNNCC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	866
BsrI	ACTGG	3 cut(s)	129, 201, 288
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	2 cut(s)	514, 858
BssT1I	CCWWGG	1 cut(s)	873
Bst4CI	ACNGT	2 cut(s)	334, 632
BstC8I	GCNNGC	2 cut(s)	758, 967
BstDEI	CTNAG	2 cut(s)	492, 672
BstDSI	CCRYGG	1 cut(s)	873
BstENI	CCTNNNNNAGG	2 cut(s)	452, 472
BstF5I	GGATG	6 cut(s)	284, 364, 394, 517, 585, 733
BstFNI	CGCG	3 cut(s)	756, 765, 953
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	2 cut(s)	517, 861
BstMAI	GTCTC	3 cut(s)	361, 445, 630
BstMBI	GATC	2 cut(s)	514, 858
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 557, 762
BstNSI	RCATGY	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	546
BstUI	CGCG	3 cut(s)	756, 765, 953
BstV1I	GCAGC	3 cut(s)	80, 124, 127
BstV2I	GAAGAC	2 cut(s)	669, 792
BstX2I	RGATCY	1 cut(s)	858
BstYI	RGATCY	1 cut(s)	858
BsuRI	GGCC	1 cut(s)	295
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	6 cut(s)	284, 364, 394, 517, 585, 733
BtsI	GCAGTG	2 cut(s)	358, 949
BtsIMutI	CAGTG	2 cut(s)	358, 949
Cac8I	GCNNGC	2 cut(s)	758, 967
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	95, 404, 1018
CviAII	CATG	9 cut(s)	19, 46, 252, 377, 422, 874, 886, 916, 1003
DdeI	CTNAG	2 cut(s)	492, 672
DpnI	GATC	2 cut(s)	516, 860
DpnII	GATC	2 cut(s)	514, 858
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	760
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	762
Eco47I	GGWCC	3 cut(s)	95, 404, 1018
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	540
EcoICRI	GAGCTC	1 cut(s)	760
EcoNI	CCTNNNNNAGG	2 cut(s)	452, 472
EcoRI	GAATTC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	9 cut(s)	22, 49, 255, 380, 425, 877, 889, 919, 1006
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	2 cut(s)	295, 450
FatI	CATG	9 cut(s)	18, 45, 251, 376, 421, 873, 885, 915, 1002
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	69, 138, 141, 922
FokI	GGATG	6 cut(s)	271, 371, 401, 524, 592, 740
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	4 cut(s)	69, 138, 141, 922
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	4 cut(s)	69, 138, 141, 922
GsaI	CCCAGC	3 cut(s)	537, 551, 564
HaeIII	GGCC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	9 cut(s)	22, 49, 255, 380, 425, 877, 889, 919, 1006
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HinfI	GANTC	3 cut(s)	103, 674, 767
HphI	GGTGA	4 cut(s)	67, 222, 340, 706
Hpy166II	GTNNAC	4 cut(s)	98, 430, 544, 806
Hpy188I	TCNGA	5 cut(s)	499, 568, 712, 799, 820
Hpy188III	TCNNGA	2 cut(s)	107, 898
Hpy8I	GTNNAC	4 cut(s)	98, 430, 544, 806
HpyAV	CCTTC	6 cut(s)	306, 423, 458, 478, 564, 597
HpyCH4III	ACNGT	2 cut(s)	334, 632
HpyCH4V	TGCA	6 cut(s)	255, 544, 622, 667, 685, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 557, 762
HpyF3I	CTNAG	2 cut(s)	492, 672
Hsp92II	CATG	9 cut(s)	22, 49, 255, 380, 425, 877, 889, 919, 1006
HspAI	GCGC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	514, 858
LmnI	GCTCC	3 cut(s)	583, 765, 800
Lsp1109I	GCAGC	3 cut(s)	80, 124, 127
LweI	GCATC	2 cut(s)	640, 718
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	73, 328, 1036
MalI	GATC	2 cut(s)	516, 860
MboI	GATC	2 cut(s)	514, 858
MboII	GAAGA	7 cut(s)	111, 114, 117, 198, 291, 669, 797
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	1 cut(s)	858
MhlI	GDGCHC	2 cut(s)	546, 762
MluCI	AATT	6 cut(s)	274, 519, 569, 607, 814, 903
MlyI	GAGTC	2 cut(s)	683, 776
MseI	TTAA	3 cut(s)	51, 383, 1057
MspA1I	CMGCKG	2 cut(s)	560, 719
MunI	CAATTG	1 cut(s)	274
MvnI	CGCG	3 cut(s)	756, 765, 953
MwoI	GCNNNNNNNGC	3 cut(s)	443, 557, 762
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	2 cut(s)	514, 858
NlaIII	CATG	9 cut(s)	22, 49, 255, 380, 425, 877, 889, 919, 1006
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	2 cut(s)	73, 328
NspI	RCATGY	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	673
PkrI	GCNGC	4 cut(s)	70, 139, 142, 923
PleI	GAGTC	2 cut(s)	682, 775
PpsI	GAGTC	2 cut(s)	682, 775
Psp124BI	GAGCTC	1 cut(s)	762
PspFI	CCCAGC	3 cut(s)	533, 547, 560
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	3 cut(s)	95, 404, 1018
PsuI	RGATCY	1 cut(s)	858
PsyI	GACNNNGTC	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	762
SaqAI	TTAA	3 cut(s)	51, 383, 1057
SatI	GCNGC	4 cut(s)	69, 138, 141, 922
Sau3AI	GATC	2 cut(s)	514, 858
Sau96I	GGNCC	3 cut(s)	95, 404, 1018
SchI	GAGTC	2 cut(s)	683, 776
SduI	GDGCHC	2 cut(s)	546, 762
SfaNI	GCATC	2 cut(s)	640, 718
SinI	GGWCC	3 cut(s)	95, 404, 1018
Sse9I	AATT	6 cut(s)	274, 519, 569, 607, 814, 903
SsiI	CCGC	5 cut(s)	24, 168, 719, 763, 921
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	762
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	334, 632
TaqI	TCGA	2 cut(s)	897, 1042
TasI	AATT	6 cut(s)	274, 519, 569, 607, 814, 903
TauI	GCSGC	1 cut(s)	924
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	3 cut(s)	51, 383, 1057
Tru9I	TTAA	3 cut(s)	51, 383, 1057
TscAI	CASTG	2 cut(s)	358, 949
TseFI	GTSAC	2 cut(s)	73, 328
TseI	GCWGC	3 cut(s)	68, 137, 140
Tsp45I	GTSAC	2 cut(s)	73, 328
TspDTI	ATGAA	6 cut(s)	438, 440, 460, 752, 798, 991
TspRI	CASTG	2 cut(s)	358, 949
Tth111I	GACNNNGTC	1 cut(s)	673
VneI	GTGCAC	1 cut(s)	542
VpaK11BI	GGWCC	3 cut(s)	95, 404, 1018
XagI	CCTNNNNNAGG	2 cut(s)	452, 472
XapI	RAATTY	1 cut(s)	814
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.