RchiOBHm_Chr5g0058361

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002211
Physical Location & Seq
Forward (+)
62594276 .. 62595416
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33503

Sequence Viewer

Length: 513 bp
ATGTGCGACACCGATTTTACTTCCGCGGTATGGAAATTCTTGGCTTTGGGACTGTTTGTTTCATCTTTTGGGAAATTGGGTTTGGGTTCGCGTTCGTCCAGCTGGCCCACTTCACCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTATTTTGAATGCTTCTGGTTTGGTGCAGCAAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTATGTTTACCTTTGTAATTCCCAGCCTCAGGGACGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATAGTGGTTTCATTGTCATATGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAATCCTTCTATGCAGGTTGGTATGAATTTCAAGGACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.06

Weight (kDa)

4.24

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 476
AccII CGCG 2 cut(s) 26, 91
AciI CCGC 2 cut(s) 24, 26
AcsI RAATTY 2 cut(s) 35, 497
AcyI GRCGYC 1 cut(s) 340
AfiI CCNNNNNNNGG 2 cut(s) 30, 334
AgsI TTSAA 2 cut(s) 244, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 3 cut(s) 102, 173, 466
AluI AGCT 3 cut(s) 102, 173, 466
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 2 cut(s) 35, 497
AspS9I GGNCC 3 cut(s) 105, 203, 506
AsuHPI GGTGA 2 cut(s) 105, 469
AvaII GGWCC 2 cut(s) 203, 506
AxyI CCTNAGG 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 203, 506
BmgT120I GGNCC 3 cut(s) 105, 203, 506
BmiI GGNNCC 1 cut(s) 303
BmsI GCATC 1 cut(s) 424
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 334
Bse21I CCTNAGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 303, 439
BseLI CCNNNNNNNGG 2 cut(s) 30, 334
BseMII CTCAG 3 cut(s) 131, 347, 458
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 281
Bsh1236I CGCG 2 cut(s) 26, 91
BshFI GGCC 1 cut(s) 106
BslFI GGGAC 3 cut(s) 63, 295, 351
BslI CCNNNNNNNGG 2 cut(s) 30, 334
BsmFI GGGAC 3 cut(s) 63, 295, 351
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 106
BspACI CCGC 2 cut(s) 24, 26
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 3 cut(s) 130, 346, 459
BspFNI CGCG 2 cut(s) 26, 91
BspLI GGNNCC 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 54, 510
BstACI GRCGYC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 117, 333, 467
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 303, 439
BstFNI CGCG 2 cut(s) 26, 91
BstUI CGCG 2 cut(s) 26, 91
BstV1I GCAGC 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 333
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 2 cut(s) 303, 439
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 105, 203, 506
Cfr42I CCGCGG 1 cut(s) 27
CviAII CATG 1 cut(s) 176
CviJI RGCY 8 cut(s) 44, 102, 106, 173, 304, 331, 359, 466
CviKI_1 RGCY 8 cut(s) 44, 102, 106, 173, 304, 331, 359, 466
DdeI CTNAG 3 cut(s) 117, 333, 467
Eco47I GGWCC 2 cut(s) 203, 506
Eco81I CCTNAGG 1 cut(s) 333
FaeI CATG 1 cut(s) 179
FaiI YATR 8 cut(s) 31, 177, 309, 354, 415, 417, 483, 495
FaqI GGGAC 3 cut(s) 63, 295, 351
FatI CATG 1 cut(s) 175
FauNDI CATATG 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 2 cut(s) 310, 446
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 1 cut(s) 179
HinfI GANTC 3 cut(s) 287, 380, 473
HphI GGTGA 2 cut(s) 105, 469
Hpy166II GTNNAC 3 cut(s) 148, 229, 313
Hpy188I TCNGA 2 cut(s) 292, 393
Hpy188III TCNNGA 2 cut(s) 185, 216
Hpy8I GTNNAC 3 cut(s) 148, 229, 313
HpyAV CCTTC 2 cut(s) 222, 487
HpyCH4III ACNGT 2 cut(s) 54, 510
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 262, 373, 485
HpyF3I CTNAG 3 cut(s) 117, 333, 467
HpySE526I ACGT 1 cut(s) 340
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 1 cut(s) 179
KspI CCGCGG 1 cut(s) 27
LmnI GCTCC 2 cut(s) 301, 463
LpnPI CCDG 8 cut(s) 88, 112, 201, 219, 237, 320, 341, 471
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 424
MaeII ACGT 1 cut(s) 340
MboII GAAGA 2 cut(s) 170, 264
MluCI AATT 4 cut(s) 35, 74, 322, 497
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 6 cut(s) 126, 342, 349, 445, 453, 462
MspA1I CMGCKG 2 cut(s) 26, 102
Mva1269I GAATGC 1 cut(s) 250
MvnI CGCG 2 cut(s) 26, 91
NdeI CATATG 1 cut(s) 415
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 303
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 287, 473
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 3 cut(s) 105, 203, 506
PvuII CAGCTG 1 cut(s) 102
SacII CCGCGG 1 cut(s) 27
SatI GCNGC 1 cut(s) 263
Sau96I GGNCC 3 cut(s) 105, 203, 506
SchI GAGTC 1 cut(s) 389
SetI ASST 9 cut(s) 104, 118, 175, 208, 318, 343, 456, 468, 490
SfaNI GCATC 1 cut(s) 424
Sfr303I CCGCGG 1 cut(s) 27
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 2 cut(s) 203, 506
Sse9I AATT 4 cut(s) 35, 74, 322, 497
SsiI CCGC 2 cut(s) 24, 26
TaaI ACNGT 2 cut(s) 54, 510
TaiI ACGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 132
TasI AATT 4 cut(s) 35, 74, 322, 497
TfiI GAWTC 2 cut(s) 287, 473
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 6 cut(s) 51, 237, 264, 396, 458, 510
VpaK11BI GGWCC 2 cut(s) 203, 506
XapI RAATTY 2 cut(s) 35, 497
ZraI GACGTC 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.