Rh3CG245000

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002211
Physical Location & Seq
Forward (+)
23535905 .. 23540095
4191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG245000.1

Sequence Viewer

Length: 741 bp
ATGAGAACGATCGCAAATTTTGGAGTCCAGTTTGATGATTTCGATTGGGTTTCTGTGGATGGGAGTGAAGATGTTGAGAAAGCTCATGGGTTTCTTGATGACGTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCAGTCCAACTCATCACCCCCAGTTTATCTGTTATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCTGATTTTGAGTGCTTCTGGTTTGGTGCAGCGAGTATCTTCATTTGGGATAGAATCAGATTGGATAGAGCCTTCTGTTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATTTGTTCAGAGAATAGTGGTTTCATTGCCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTCAGGGAATCCTTCTATGCAGGAACTGGATTGGCTGTTGTTCATCAATATTTATTCAAGTATGTGCGTTTTACTTTGTTTGCTGCTTTGCACTATCTCAATCACTTATTCAACAAATCTGATATAAAGAGCATAAAAGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAATTCTGTGCTGAAGTATTTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.67

Weight (kDa)

6.05

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AcsI RAATTY 3 cut(s) 16, 206, 643
AcuI CTGAAG 1 cut(s) 674
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 4 cut(s) 161, 532, 586, 664
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 3 cut(s) 83, 239, 475
AluI AGCT 3 cut(s) 83, 239, 475
Alw21I GWGCWC 1 cut(s) 477
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 1 cut(s) 694
ApeKI GCWGC 2 cut(s) 271, 557
ApoI RAATTY 3 cut(s) 16, 206, 643
AseI ATTAAT 1 cut(s) 705
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 176, 478
AvaII GGWCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 342
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 283, 544
BccI CCATC 2 cut(s) 53, 430
BfaI CTAG 1 cut(s) 620
BisI GCNGC 2 cut(s) 272, 558
BlsI GCNGC 2 cut(s) 273, 559
BmcAI AGTACT 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 433
BmuI ACTGGG 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 3 cut(s) 28, 190, 505
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 416
BseGI GGATG 4 cut(s) 64, 238, 353, 448
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 356, 490
BseNI ACTGG 3 cut(s) 28, 190, 505
BseXI GCAGC 2 cut(s) 283, 544
BseYI CCCAGC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 696
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 343
BsnI GGCC 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 2 cut(s) 9, 241
BspANI GGCC 1 cut(s) 696
BspCNI CTCAG 2 cut(s) 355, 489
BspLI GGNNCC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 416
BsrI ACTGG 3 cut(s) 28, 190, 505
BssMI GATC 2 cut(s) 9, 241
Bst6I CTCTTC 2 cut(s) 162, 632
BstDEI CTNAG 2 cut(s) 342, 476
BstF5I GGATG 4 cut(s) 64, 238, 353, 448
BstKTI GATC 2 cut(s) 12, 244
BstMBI GATC 2 cut(s) 9, 241
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 283, 544
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 1 cut(s) 696
BtsCI GGATG 4 cut(s) 64, 238, 353, 448
CaiI CAGNNNCTG 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 220
CviAII CATG 2 cut(s) 86, 730
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 342, 476
DpnI GATC 2 cut(s) 11, 243
DpnII GATC 2 cut(s) 9, 241
Eam1104I CTCTTC 2 cut(s) 162, 632
EarI CTCTTC 2 cut(s) 162, 632
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 674
Eco81I CCTNAGG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 2 cut(s) 89, 733
FatI CATG 2 cut(s) 85, 729
Fnu4HI GCNGC 2 cut(s) 272, 558
FokI GGATG 4 cut(s) 71, 245, 360, 455
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 2 cut(s) 272, 558
FspBI CTAG 1 cut(s) 620
GluI GCNGC 2 cut(s) 272, 558
GsaI CCCAGC 1 cut(s) 340
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 696
Hin1II CATG 2 cut(s) 89, 733
HinfI GANTC 4 cut(s) 24, 296, 389, 482
HphI GGTGA 2 cut(s) 176, 478
Hpy166II GTNNAC 2 cut(s) 139, 322
Hpy188I TCNGA 6 cut(s) 217, 246, 301, 402, 427, 595
Hpy188III TCNNGA 3 cut(s) 95, 126, 688
Hpy8I GTNNAC 2 cut(s) 139, 322
HpyAV CCTTC 3 cut(s) 132, 324, 496
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 271, 382, 494, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 342, 476
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 89, 733
Kzo9I GATC 2 cut(s) 9, 241
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 2 cut(s) 283, 544
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 620
MaeII ACGT 1 cut(s) 102
MalI GATC 2 cut(s) 11, 243
MboI GATC 2 cut(s) 9, 241
MboII GAAGA 7 cut(s) 80, 149, 273, 646, 649, 674, 676
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 4 cut(s) 16, 206, 331, 643
MlyI GAGTC 2 cut(s) 33, 398
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 7 cut(s) 351, 358, 454, 462, 609, 633, 710
MseI TTAA 3 cut(s) 630, 705, 722
MslI CAYNNNNRTG 1 cut(s) 611
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 9, 241
NlaIII CATG 2 cut(s) 89, 733
NlaIV GGNNCC 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 296, 482
PkrI GCNGC 2 cut(s) 273, 559
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 2 cut(s) 32, 397
PpsI GAGTC 2 cut(s) 32, 397
PshBI ATTAAT 1 cut(s) 705
PsiI TTATAA 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 477
PspFI CCCAGC 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 500
PvuI CGATCG 1 cut(s) 12
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 630, 705, 722
SatI GCNGC 2 cut(s) 272, 558
Sau3AI GATC 2 cut(s) 9, 241
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 2 cut(s) 33, 398
SduI GDGCHC 1 cut(s) 477
SetI ASST 8 cut(s) 85, 105, 118, 168, 241, 327, 465, 477
SfaNI GCATC 1 cut(s) 433
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 4 cut(s) 16, 206, 331, 643
SspI AATATT 1 cut(s) 524
SspMI CTAG 1 cut(s) 620
SstI GAGCTC 1 cut(s) 477
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 42
TasI AATT 4 cut(s) 16, 206, 331, 643
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 296, 482
Tru1I TTAA 3 cut(s) 630, 705, 722
Tru9I TTAA 3 cut(s) 630, 705, 722
TseI GCWGC 2 cut(s) 271, 557
TspDTI ATGAA 6 cut(s) 147, 273, 405, 467, 506, 718
VpaK11BI GGWCC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 3 cut(s) 16, 206, 643
XspI CTAG 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.