Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

20401864 .. 20404426

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGATGTTCGGCGGCAGAAGCATGGGCGGAGGTGGCGGTGGAAGTATGTTCCGTACAGTCAGCAGGGCGGCGCTGACTAGAACCACCGGAGTTGGAATCCAAGAACCCATCTCTGCTTCTTCCAACTCCAACTCCAACACCACAACTGCTACTAGTCCTACGGCTTCTAGGAATACCCAGAAGCCGGGCTCGGTCAGTAACCTCTGTCTCTCTTCTCCTGCTTCTCCCAACTGTGGGCCTGTAAGTTCCGGCGGGCCCAACTGGCCCACTTCGCCGCAGTTTGATGATTTTGACTGGGTTTCTGTGGATGGGAGTGAAGATGTTGAGAGAGCTCATGGGTATCCTGATGACTTTGTTCTTGGACCTGTGCCTTCTGGAGATGAAGTTCACAACGCTATTTCCACTCTTAAGCGGGTGTTCAGTCCTACTCATCACCCTCAGTTCATCCGGGATAAATTTGGTTCCGAGTATTTGGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGGTGCAAAGAGTATCTTCATTTGGGTCAGAACCAGATTGGATGGAGCCTTCTGCTTATCTTTGTAATTCCCAGCCTGAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCCGTTCAGAGAATGGTGGTTTCATTATCATCTGATAGAGCAGTTTGGGATGCTGTGATGAACAATGAGGTAGTGAGAGAGCTCAGGGAATCTTTCTATGCAGCTGAAGACAATAGTTCCCAGAGCTCATCTGAGAATTCTGATGATAGCAGTACATCAACAAACTTTTTGAGGTGGATCTTTCAAAATACTTTTGGAAAGGTTATGAAGGTAATAGAGAACATTACTAAGCTTTTTGATCACTTGCTTCAACCTCAAGGCAGTGGCAAGGCGAAAGCTGAAGCTGGTAATCTGTTTGAGGAGAGGCTAAGAACATCAGTCATGCTCTCTGTCGTGGTCCTCTTGGTTGTGGTGGTTACTCGATCCCACAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

36.66

Weight (kDa)

5.04

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	12, 27, 36, 68, 252, 275, 412
AclWI	GGATC	2 cut(s)	827, 999
AcsI	RAATTY	2 cut(s)	455, 778
AcuI	CTGAAG	2 cut(s)	768, 942
AfaI	GTAC	2 cut(s)	55, 796
AfiI	CCNNNNNNNGG	4 cut(s)	184, 233, 234, 592
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	827, 893
AhlI	ACTAGT	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	8 cut(s)	332, 488, 724, 746, 768, 874, 920, 926
AluI	AGCT	8 cut(s)	332, 488, 724, 746, 768, 874, 920, 926
Alw21I	GWGCWC	3 cut(s)	334, 726, 770
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	827, 999
AoxI	GGCC	3 cut(s)	236, 254, 263
ApaI	GGGCCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	2 cut(s)	455, 778
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	6 cut(s)	236, 254, 255, 264, 362, 979
AsuC2I	CCSGG	2 cut(s)	186, 449
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	362, 979
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	258
BanII	GRGCYC	5 cut(s)	191, 258, 334, 726, 770
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	3 cut(s)	334, 726, 770
BbvI	GCAGC	1 cut(s)	755
BccI	CCATC	3 cut(s)	116, 302, 550
BceAI	ACGGC	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	351
BclI	TGATCA	2 cut(s)	490, 880
BcnI	CCSGG	2 cut(s)	186, 449
BcoDI	GTCTC	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	3 cut(s)	78, 153, 168
BfoI	RGCGCY	1 cut(s)	74
BfrI	CTTAAG	1 cut(s)	407
BfuI	GTATCC	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	262
BisI	GCNGC	4 cut(s)	13, 69, 275, 744
BlsI	GCNGC	4 cut(s)	14, 70, 276, 745
Bme1390I	CCNGG	2 cut(s)	186, 449
Bme18I	GGWCC	2 cut(s)	362, 979
BmgT120I	GGNCC	6 cut(s)	236, 254, 255, 264, 362, 979
BmiI	GGNNCC	3 cut(s)	256, 463, 561
BmrFI	CCNGG	2 cut(s)	186, 449
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	1 cut(s)	682
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	882
BpuMI	CCSGG	2 cut(s)	186, 449
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 369, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 233, 234, 592
Bse1I	ACTGG	2 cut(s)	266, 299
Bse21I	CCTNAGG	1 cut(s)	591
BseGI	GGATG	7 cut(s)	313, 444, 487, 561, 602, 641, 697
BseLI	CCNNNNNNNGG	4 cut(s)	184, 233, 234, 592
BseMII	CTCAG	4 cut(s)	452, 582, 739, 765
BseNI	ACTGG	2 cut(s)	266, 299
BseRI	GAGGAG	1 cut(s)	956
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	755
BseYI	CCCAGC	1 cut(s)	585
BshFI	GGCC	3 cut(s)	238, 256, 265
BsiHKAI	GWGCWC	3 cut(s)	334, 726, 770
BsiSI	CCGG	4 cut(s)	87, 185, 249, 448
BslI	CCNNNNNNNGG	4 cut(s)	184, 233, 234, 592
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	238, 256, 265
Bsp120I	GGGCCC	1 cut(s)	254
Bsp1286I	GDGCHC	5 cut(s)	191, 258, 334, 726, 770
Bsp143I	GATC	4 cut(s)	490, 819, 880, 1004
BspACI	CCGC	7 cut(s)	12, 27, 36, 68, 252, 275, 412
BspANI	GGCC	3 cut(s)	238, 256, 265
BspCNI	CTCAG	4 cut(s)	451, 583, 738, 766
BspLI	GGNNCC	3 cut(s)	256, 463, 561
BspPI	GGATC	2 cut(s)	827, 999
BspTI	CTTAAG	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	266, 299
BssMI	GATC	4 cut(s)	490, 819, 880, 1004
Bst4CI	ACNGT	2 cut(s)	58, 233
Bst6I	CTCTTC	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	6 cut(s)	438, 591, 725, 774, 870, 950
BstF5I	GGATG	7 cut(s)	313, 444, 487, 561, 602, 641, 697
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	493, 822, 883, 1007
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	490, 819, 880, 1004
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 33, 262, 271
BstSCI	CCNGG	2 cut(s)	184, 447
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	755
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	819
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	238, 256, 265
BtsCI	GGATG	7 cut(s)	313, 444, 487, 561, 602, 641, 697
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	1 cut(s)	910
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	6 cut(s)	236, 254, 255, 264, 362, 979
Csp6I	GTAC	2 cut(s)	54, 795
CspCI	CAANNNNNGTGG	3 cut(s)	73, 108, 998
CviAII	CATG	3 cut(s)	22, 335, 964
CviQI	GTAC	2 cut(s)	54, 795
DdeI	CTNAG	6 cut(s)	438, 591, 725, 774, 870, 950
DpnI	GATC	4 cut(s)	492, 821, 882, 1006
DpnII	GATC	4 cut(s)	490, 819, 880, 1004
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	3 cut(s)	332, 724, 768
Eco24I	GRGCYC	5 cut(s)	191, 258, 334, 726, 770
Eco47I	GGWCC	2 cut(s)	362, 979
Eco53kI	GAGCTC	3 cut(s)	332, 724, 768
Eco57I	CTGAAG	2 cut(s)	768, 942
Eco81I	CCTNAGG	1 cut(s)	591
EcoICRI	GAGCTC	3 cut(s)	332, 724, 768
EcoRI	GAATTC	1 cut(s)	778
EcoT38I	GRGCYC	5 cut(s)	191, 258, 334, 726, 770
FaeI	CATG	3 cut(s)	25, 338, 967
FaiI	YATR	7 cut(s)	23, 47, 336, 612, 741, 848, 965
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FatI	CATG	3 cut(s)	21, 334, 963
FauI	CCCGC	2 cut(s)	245, 405
FbaI	TGATCA	2 cut(s)	490, 880
Fnu4HI	GCNGC	4 cut(s)	13, 69, 275, 744
FokI	GGATG	7 cut(s)	320, 431, 494, 568, 609, 628, 704
FriOI	GRGCYC	5 cut(s)	191, 258, 334, 726, 770
Fsp4HI	GCNGC	4 cut(s)	13, 69, 275, 744
FspBI	CTAG	3 cut(s)	78, 153, 168
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	4 cut(s)	13, 69, 275, 744
GsaI	CCCAGC	1 cut(s)	589
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	238, 256, 265
HapII	CCGG	4 cut(s)	87, 185, 249, 448
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	25, 338, 967
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	3 cut(s)	96, 638, 731
HpaII	CCGG	4 cut(s)	87, 185, 249, 448
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	7 cut(s)	466, 495, 544, 651, 676, 775, 784
Hpy188III	TCNNGA	2 cut(s)	344, 375
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	3 cut(s)	381, 573, 844
HpyCH4III	ACNGT	2 cut(s)	58, 233
HpyCH4V	TGCA	3 cut(s)	520, 631, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 33, 262, 271
HpyF3I	CTNAG	6 cut(s)	438, 591, 725, 774, 870, 950
Hsp92II	CATG	3 cut(s)	25, 338, 967
HspAI	GCGC	1 cut(s)	71
Ksp22I	TGATCA	2 cut(s)	490, 880
Kzo9I	GATC	4 cut(s)	490, 819, 880, 1004
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	1 cut(s)	755
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	3 cut(s)	78, 153, 168
MaeIII	GTNAC	2 cut(s)	197, 997
MalI	GATC	4 cut(s)	492, 821, 882, 1006
MboI	GATC	4 cut(s)	490, 819, 880, 1004
MboII	GAAGA	5 cut(s)	111, 204, 329, 522, 761
MflI	RGATCY	1 cut(s)	819
MhlI	GDGCHC	5 cut(s)	191, 258, 334, 726, 770
MluCI	AATT	3 cut(s)	455, 580, 778
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	4 cut(s)	73, 147, 153, 159
MseI	TTAA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	746
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	4 cut(s)	87, 185, 249, 448
MspR9I	CCNGG	2 cut(s)	186, 449
MwoI	GCNNNNNNNGC	4 cut(s)	18, 33, 262, 271
NciI	CCSGG	2 cut(s)	186, 449
NdeII	GATC	4 cut(s)	490, 819, 880, 1004
NlaIII	CATG	3 cut(s)	25, 338, 967
NlaIV	GGNNCC	3 cut(s)	256, 463, 561
PfeI	GAWTC	2 cut(s)	96, 731
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	14, 70, 276, 745
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Psp124BI	GAGCTC	3 cut(s)	334, 726, 770
PspFI	CCCAGC	1 cut(s)	585
PspN4I	GGNNCC	3 cut(s)	256, 463, 561
PspOMI	GGGCCC	1 cut(s)	254
PspPI	GGNCC	6 cut(s)	236, 254, 255, 264, 362, 979
PsuI	RGATCY	1 cut(s)	819
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	2 cut(s)	55, 796
RsaNI	GTAC	2 cut(s)	54, 795
SacI	GAGCTC	3 cut(s)	334, 726, 770
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	4 cut(s)	13, 69, 275, 744
Sau3AI	GATC	4 cut(s)	490, 819, 880, 1004
Sau96I	GGNCC	6 cut(s)	236, 254, 255, 264, 362, 979
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	186, 449
SduI	GDGCHC	5 cut(s)	191, 258, 334, 726, 770
SfaNI	GCATC	1 cut(s)	682
SfiI	GGCCNNNNNGGCC	1 cut(s)	262
SinI	GGWCC	2 cut(s)	362, 979
SmlI	CTYRAG	2 cut(s)	407, 897
SmoI	CTYRAG	2 cut(s)	407, 897
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	3 cut(s)	455, 580, 778
SsiI	CCGC	7 cut(s)	12, 27, 36, 68, 252, 275, 412
SspMI	CTAG	3 cut(s)	78, 153, 168
SstI	GAGCTC	3 cut(s)	334, 726, 770
StyD4I	CCNGG	2 cut(s)	184, 447
TaaI	ACNGT	2 cut(s)	58, 233
TaqI	TCGA	1 cut(s)	1003
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	3 cut(s)	455, 580, 778
TatI	WGTACW	1 cut(s)	794
TauI	GCSGC	3 cut(s)	15, 71, 277
TfiI	GAWTC	2 cut(s)	96, 731
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	910
TseI	GCWGC	1 cut(s)	743
TspDTI	ATGAA	6 cut(s)	396, 433, 522, 654, 716, 863
TspGWI	ACGGA	2 cut(s)	41, 634
TspRI	CASTG	1 cut(s)	910
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	362, 979
XapI	RAATTY	2 cut(s)	455, 778
XspI	CTAG	3 cut(s)	78, 153, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.