MD07G1251600.v1.1

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002211
Physical Location & Seq
Forward (+)
31972128 .. 31973660
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1251600.v1.1.491

Sequence Viewer

Length: 450 bp
ATGTTGCAGTCTCATGGTTCTGAGAGAGTTTACGATGCTTTCCATCTCTTGCAAACTGAGTCTTCTGTGCAGAGAATGGTGATGGCATTGTCATCTGATACAGCGGTTTGGGATGCTGTGATGAACAATGAGGTGGTGCGGGAGCTCCGGGGGTCTTCCTATGCAGATGAAGAAAATAGCTCTGATAGTCCACAAGAGAATTCTGATGATAACAACGATAAAGCAACAAACATTGTGAAATGGATCTTTCAAAACACTATGGCAAAAGTCATGGAAGCAATCGAGAAAGTTACGAAGGTCATGGGCGATTTATTTCAACCTCCAAGCAGTGGAAATGCGAAAGCAGAAGCCAGCAATCGCTTTGAGGACAAGCTGAAAACATCGTTCATGCTCTCCGTTGTGGTCCTGTTGATTGTGGTGGTTATTCGAACCCACAAGGCTTCACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.61

Weight (kDa)

5.02

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 329
AciI CCGC 2 cut(s) 104, 139
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 2 cut(s) 251, 317
AluBI AGCT 3 cut(s) 145, 180, 373
AluI AGCT 3 cut(s) 145, 180, 373
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 91, 435
AsuII TTCGAA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 403
BaeI ACNNNNGTAYC 2 cut(s) 90, 123
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 2 cut(s) 54, 147
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 2 cut(s) 51, 76
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 25, 103
BpiI GAAGAC 2 cut(s) 54, 147
Bpu14I TTCGAA 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 12, 48
BsgI GTGCAG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 15
Bsp119I TTCGAA 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 2 cut(s) 104, 139
BspCNI CTCAG 2 cut(s) 13, 49
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 21, 57
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 54, 147
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 403
CviAII CATG 4 cut(s) 14, 271, 301, 388
CviJI RGCY 5 cut(s) 145, 180, 350, 373, 440
CviKI_1 RGCY 5 cut(s) 145, 180, 350, 373, 440
DdeI CTNAG 2 cut(s) 21, 57
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 4 cut(s) 17, 274, 304, 391
FaiI YATR 6 cut(s) 15, 162, 260, 272, 302, 389
FatI CATG 4 cut(s) 13, 270, 300, 387
FauI CCCGC 1 cut(s) 132
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 147
HapII CCGG 1 cut(s) 148
Hin1II CATG 4 cut(s) 17, 274, 304, 391
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 91, 435
Hpy166II GTNNAC 2 cut(s) 31, 191
Hpy188I TCNGA 4 cut(s) 22, 97, 184, 205
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 31, 191
HpyAV CCTTC 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 7, 52, 70, 164
HpyF3I CTNAG 2 cut(s) 21, 57
Hsp92II CATG 4 cut(s) 17, 274, 304, 391
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 142, 150
LpnPI CCDG 3 cut(s) 161, 364, 419
LweI GCATC 2 cut(s) 25, 103
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 3 cut(s) 54, 147, 182
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 199
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 3 cut(s) 124, 330, 358
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 149
NciI CCSGG 1 cut(s) 149
NdeII GATC 1 cut(s) 243
NlaIII CATG 4 cut(s) 17, 274, 304, 391
NspV TTCGAA 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 329
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 403
PsuI RGATCY 1 cut(s) 243
SacI GAGCTC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 147
SetI ASST 6 cut(s) 135, 147, 182, 300, 322, 375
SfaNI GCATC 2 cut(s) 25, 103
SfuI TTCGAA 1 cut(s) 427
SinI GGWCC 1 cut(s) 403
Sse9I AATT 1 cut(s) 199
SsiI CCGC 2 cut(s) 104, 139
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 147
TaqI TCGA 2 cut(s) 282, 427
TasI AATT 1 cut(s) 199
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 137, 183, 376
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.