Rh5BG317100

conserved protein UCP012943

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002211
Physical Location & Seq
Reverse (-)
42243315 .. 42255976
12662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG317100.1

Sequence Viewer

Length: 390 bp
ATGTGCGACACCGATTTTACTTCCGCGGTATGGAAATTCTTGGTGCCTGTTTCTGTTAGTTCCAGCAGTTCACAACGCTGTTTCTACTCTTCAACACGAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTATGTTTACCTTTGTAATTCCCAGCCTCAGGGACGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATAGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAATCCTTCTATGCAGGTTGGCACAAATTAGGAGGGGTCAATCTCCAAGATGACAATGAAATAAGCTATGATCAAATTGATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.78

Weight (kDa)

4.64

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 43
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 26
AcsI RAATTY 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 30, 166
AgsI TTSAA 1 cut(s) 93
AluBI AGCT 2 cut(s) 298, 369
AluI AGCT 2 cut(s) 298, 369
ApoI RAATTY 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 301
AxyI CCTNAGG 1 cut(s) 165
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BanI GGYRCC 1 cut(s) 43
BauI CACGAG 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 124
BclI TGATCA 2 cut(s) 373, 382
BfuAI ACCTGC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 45, 135
BmsI GCATC 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 166
Bse21I CCTNAGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 135, 271
BseLI CCNNNNNNNGG 2 cut(s) 30, 166
BseMII CTCAG 2 cut(s) 179, 290
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 43
BslFI GGGAC 2 cut(s) 127, 183
BslI CCNNNNNNNGG 2 cut(s) 30, 166
BsmFI GGGAC 2 cut(s) 127, 183
Bsp143I GATC 2 cut(s) 373, 382
BspACI CCGC 2 cut(s) 24, 26
BspCNI CTCAG 2 cut(s) 178, 291
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 45, 135
BspMI ACCTGC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 373, 382
BssNI GRCGYC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 165, 299
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 135, 271
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 2 cut(s) 376, 385
BstMBI GATC 2 cut(s) 373, 382
BstUI CGCG 1 cut(s) 26
Bsu36I CCTNAGG 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 2 cut(s) 135, 271
BveI ACCTGC 1 cut(s) 308
Cfr42I CCGCGG 1 cut(s) 27
CviJI RGCY 5 cut(s) 136, 163, 191, 298, 369
CviKI_1 RGCY 5 cut(s) 136, 163, 191, 298, 369
DdeI CTNAG 2 cut(s) 165, 299
DpnI GATC 2 cut(s) 375, 384
DpnII GATC 2 cut(s) 373, 382
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco81I CCTNAGG 1 cut(s) 165
FaiI YATR 5 cut(s) 31, 141, 186, 315, 372
FaqI GGGAC 2 cut(s) 127, 183
FbaI TGATCA 2 cut(s) 373, 382
FokI GGATG 2 cut(s) 142, 278
GsaI CCCAGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 172
HinfI GANTC 3 cut(s) 119, 212, 305
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 71, 145
Hpy188I TCNGA 3 cut(s) 124, 225, 250
Hpy8I GTNNAC 2 cut(s) 71, 145
HpyAV CCTTC 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 205, 317
HpyF3I CTNAG 2 cut(s) 165, 299
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 172
Ksp22I TGATCA 2 cut(s) 373, 382
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 2 cut(s) 373, 382
LmnI GCTCC 2 cut(s) 133, 295
LpnPI CCDG 5 cut(s) 60, 76, 152, 173, 303
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 172
MalI GATC 2 cut(s) 375, 384
MboI GATC 2 cut(s) 373, 382
MboII GAAGA 2 cut(s) 81, 96
MluCI AATT 4 cut(s) 35, 154, 329, 378
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 6 cut(s) 174, 181, 277, 285, 294, 329
MspA1I CMGCKG 1 cut(s) 26
MvnI CGCG 1 cut(s) 26
NdeII GATC 2 cut(s) 373, 382
NlaIV GGNNCC 2 cut(s) 45, 135
PfeI GAWTC 2 cut(s) 119, 305
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 45, 135
SacII CCGCGG 1 cut(s) 27
Sau3AI GATC 2 cut(s) 373, 382
SchI GAGTC 1 cut(s) 221
SetI ASST 6 cut(s) 150, 175, 288, 300, 322, 371
SfaNI GCATC 1 cut(s) 256
Sfr303I CCGCGG 1 cut(s) 27
SgrBI CCGCGG 1 cut(s) 27
Sse9I AATT 4 cut(s) 35, 154, 329, 378
SsiI CCGC 2 cut(s) 24, 26
TaiI ACGT 1 cut(s) 175
TasI AATT 4 cut(s) 35, 154, 329, 378
TfiI GAWTC 2 cut(s) 119, 305
TspDTI ATGAA 4 cut(s) 96, 228, 290, 375
XapI RAATTY 1 cut(s) 35
ZraI GACGTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.