Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006924.1

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

38533 .. 40669

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006924.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgatgttcggcggcagaagcatgggcggcggtggcagcggaggaagtatgttccgtacagtcagcagggcggcgctgactagaactaccggtgttgcaatccaagaacccatcacttcttcgagttctaacaccagcacaaccaccaccacgactgctactagtccttcggcttctaggaatacccagaaacccggttcggttagtaacctctgtctctcttctcctacctctccgaattgtgggcccgtttctgcgagttccgacggccacaactggcccacttcgcctcagtttgatgatttcgattgggtttctgtggacgggagtgaagacgttgagaaagctcatgggtttcttgatgactttgttcttggacctgttccttctggagatgaagttcacaacgctgtttctgctcttcaacaggtgttcactcctactcatcatccccagttcatccgggataaatttggttccgagattccggtcaccggtcgccggagtccgttgccagccactagtcaccgaagtccggcaaggtttctgatgacttctctctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

19.82

Weight (kDa)

6.58

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	12, 27, 30, 39, 71
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	4 cut(s)	242, 494, 501, 535
AgeI	ACCGGT	2 cut(s)	89, 494
AgsI	TTSAA	1 cut(s)	425
AhlI	ACTAGT	2 cut(s)	161, 521
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	221
AoxI	GGCC	3 cut(s)	245, 268, 278
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	470
AsiGI	ACCGGT	2 cut(s)	89, 494
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	4 cut(s)	245, 246, 279, 377
AsuC2I	CCSGG	2 cut(s)	195, 464
AsuHPI	GGTGA	2 cut(s)	484, 518
AvaII	GGWCC	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	195, 464
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	2 cut(s)	161, 521
BfaI	CTAG	4 cut(s)	81, 162, 177, 522
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	4 cut(s)	13, 28, 37, 72
BlsI	GCNGC	4 cut(s)	14, 29, 38, 73
Bme1390I	CCNGG	2 cut(s)	195, 464
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	4 cut(s)	245, 246, 279, 377
BmiI	GGNNCC	2 cut(s)	247, 478
BmrFI	CCNGG	2 cut(s)	195, 464
BmrI	ACTGGG	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	411
BpuMI	CCSGG	2 cut(s)	195, 464
BsaWI	WCCGGW	3 cut(s)	89, 487, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 494, 501, 535
Bse118I	RCCGGY	2 cut(s)	89, 494
Bse1I	ACTGG	2 cut(s)	281, 454
BseGI	GGATG	2 cut(s)	448, 459
BseLI	CCNNNNNNNGG	4 cut(s)	242, 494, 501, 535
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	281, 454
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	3 cut(s)	247, 270, 280
BshTI	ACCGGT	2 cut(s)	89, 494
BsiEI	CGRYCG	1 cut(s)	499
BsiSI	CCGG	7 cut(s)	90, 195, 463, 488, 495, 502, 536
BslI	CCNNNNNNNGG	4 cut(s)	242, 494, 501, 535
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	247, 270, 280
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	249
BspACI	CCGC	5 cut(s)	12, 27, 30, 39, 71
BspANI	GGCC	3 cut(s)	247, 270, 280
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	247, 478
BspQI	GCTCTTC	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	89, 494
BsrI	ACTGG	2 cut(s)	281, 454
BssAI	RCCGGY	2 cut(s)	89, 494
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	226, 426
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	291, 564
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	448, 459
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	221
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 27, 33, 36, 286, 416
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	193, 462
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	247, 270, 280
BtsCI	GGATG	2 cut(s)	448, 459
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	2 cut(s)	89, 494
Cfr13I	GGNCC	4 cut(s)	245, 246, 279, 377
Csp6I	GTAC	1 cut(s)	57
CspAI	ACCGGT	2 cut(s)	89, 494
CviAII	CATG	2 cut(s)	22, 350
CviJI	RGCY	6 cut(s)	173, 247, 270, 280, 347, 518
CviKI_1	RGCY	6 cut(s)	173, 247, 270, 280, 347, 518
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	291, 564
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	226, 426
EarI	CTCTTC	2 cut(s)	226, 426
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	2 cut(s)	25, 353
FaiI	YATR	3 cut(s)	23, 50, 351
FatI	CATG	2 cut(s)	21, 349
Fnu4HI	GCNGC	4 cut(s)	13, 28, 37, 72
FokI	GGATG	2 cut(s)	435, 446
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	13, 28, 37, 72
FspBI	CTAG	4 cut(s)	81, 162, 177, 522
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	4 cut(s)	13, 28, 37, 72
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	3 cut(s)	247, 270, 280
HapII	CCGG	7 cut(s)	90, 195, 463, 488, 495, 502, 536
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	25, 353
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	484, 505
HpaII	CCGG	7 cut(s)	90, 195, 463, 488, 495, 502, 536
HphI	GGTGA	2 cut(s)	484, 518
Hpy166II	GTNNAC	3 cut(s)	322, 403, 435
Hpy188I	TCNGA	4 cut(s)	237, 265, 481, 549
Hpy188III	TCNNGA	2 cut(s)	359, 390
Hpy8I	GTNNAC	3 cut(s)	322, 403, 435
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	177, 396
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 27, 33, 36, 286, 416
HpyF3I	CTNAG	2 cut(s)	291, 564
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	25, 353
HspAI	GCGC	1 cut(s)	74
LguI	GCTCTTC	1 cut(s)	426
Lsp1109I	GCAGC	1 cut(s)	48
MaeI	CTAG	4 cut(s)	81, 162, 177, 522
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	206, 490, 524
MboII	GAAGA	4 cut(s)	111, 213, 344, 413
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	238, 470
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	4 cut(s)	35, 221, 241, 300
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	7 cut(s)	90, 195, 463, 488, 495, 502, 536
MspR9I	CCNGG	2 cut(s)	195, 464
MwoI	GCNNNNNNNGC	6 cut(s)	18, 27, 33, 36, 286, 416
NciI	CCSGG	2 cut(s)	195, 464
NlaIII	CATG	2 cut(s)	25, 353
NlaIV	GGNNCC	2 cut(s)	247, 478
NmuCI	GTSAC	2 cut(s)	490, 524
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	462
PinAI	ACCGGT	2 cut(s)	89, 494
PkrI	GCNGC	4 cut(s)	14, 29, 38, 73
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	247, 478
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	4 cut(s)	245, 246, 279, 377
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	4 cut(s)	13, 28, 37, 72
Sau96I	GGNCC	4 cut(s)	245, 246, 279, 377
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	2 cut(s)	195, 464
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	213, 233, 339, 349, 382, 432, 545
SinI	GGWCC	1 cut(s)	377
SpeI	ACTAGT	2 cut(s)	161, 521
Sse9I	AATT	2 cut(s)	238, 470
SsiI	CCGC	5 cut(s)	12, 27, 30, 39, 71
SspMI	CTAG	4 cut(s)	81, 162, 177, 522
StyD4I	CCNGG	2 cut(s)	193, 462
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	122, 306
TasI	AATT	2 cut(s)	238, 470
TauI	GCSGC	3 cut(s)	15, 30, 74
TfiI	GAWTC	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	490, 524
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	2 cut(s)	490, 524
TspDTI	ATGAA	2 cut(s)	411, 448
TspGWI	ACGGA	2 cut(s)	44, 498
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	470
XspI	CTAG	4 cut(s)	81, 162, 177, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.