Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Forward (+)

24732597 .. 24733824

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGAATCAGAATCGGCGACGGTGACGGCGACAAATACGGCGGCACAGAGGAGCTAGAACTTTTCGGAAAATCTGATACTGTTACAGTAAACAGTATACCGCATATGTCTCCGTCAGTTTCTTCGTCATCCGCATCCGCGAAGATGAGTTATGGATTCAACGAGGAAGAGTTTGAATGGGTGGCTGTAGATAAAGAGATTGATCTTGTTACGGATAAAGCTCCGGAACTTGACGAAGTTGATGATGCTTTCTCTGCACTTCAATTGATGTTCAATGATGATGATGACGAAGAATCAGGAGACCAACTTTCAGAGTCAGAGTTTGTGGATTGGATTGAGCCTTCGTTGCAGCTTTGCAATACTAGCCTTCTACAGCCTTTTATGCTGGACAGACTCTATGACGCCTTTCATGTGTTTCAGACCGACCCATCTGTTCAGAGAATGGTTATGTCATTGACTTCAGACAAGGCTGTTTGGGATGCGGTGATGAACAATGAGGTTGTCCGGGAGCTTATAAGCAACGCTGAGAGGTCAGAAGAAGACTCTGGTTCAGCCGCAAATTTCTTAAGAAGGTTGTTTGAGAGAAGTGCCGTCAAAATCATGGACGCAATGGAGAGAGTCACAAAGTATGTCACTGACCTTTTCAACGTTGTTCCTGGAGATGAGACGGTTGTGTTAGCCTCAGGTGCTGCGCCTAAGATGGAGAAGCTTCAAATGACGGTTCTGCTCGCCATTGTTGTCCTGCTTATCGTGTTAGTTACACGAGTAACAAGGTGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.96

Weight (kDa)

4.23

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	97
AccII	CGCG	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	6 cut(s)	42, 101, 132, 138, 482, 555
AclI	AACGTT	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	402
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	6 cut(s)	160, 176, 263, 274, 646, 713
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	5 cut(s)	55, 221, 352, 511, 709
AluI	AGCT	5 cut(s)	55, 221, 352, 511, 709
Alw26I	GTCTC	3 cut(s)	114, 294, 659
AlwNI	CAGNNNCTG	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	349, 689
ApoI	RAATTY	1 cut(s)	559
AspLEI	GCGC	1 cut(s)	694
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	35, 496
AxyI	CCTNAGG	1 cut(s)	682
BauI	CACGAG	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	361, 676
BccI	CCATC	2 cut(s)	436, 694
BceAI	ACGGC	3 cut(s)	43, 55, 575
BciT130I	CCWGG	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	3 cut(s)	114, 294, 659
BfaI	CTAG	2 cut(s)	56, 363
BfmI	CTRYAG	2 cut(s)	186, 371
BfrI	CTTAAG	1 cut(s)	565
BisI	GCNGC	4 cut(s)	43, 350, 555, 690
BlsI	GCNGC	4 cut(s)	44, 351, 556, 691
Bme1390I	CCNGG	2 cut(s)	506, 657
BmrFI	CCNGG	2 cut(s)	506, 657
BmsI	GCATC	3 cut(s)	143, 235, 469
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	682
Bse3DI	GCAATG	1 cut(s)	615
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	657
BseGI	GGATG	3 cut(s)	128, 134, 484
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	516, 696
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	361, 676
BsgI	GTGCAG	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	224, 505
BsmAI	GTCTC	3 cut(s)	114, 294, 659
BsmBI	CGTCTC	1 cut(s)	659
Bso31I	GGTCTC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	6 cut(s)	42, 101, 132, 138, 482, 555
BspCNI	CTCAG	2 cut(s)	517, 695
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	140
BspTI	CTTAAG	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	615
BssMI	GATC	1 cut(s)	202
BssNAI	GTATAC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	762
Bst1107I	GTATAC	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	6 cut(s)	23, 82, 88, 95, 670, 721
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	565
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	3 cut(s)	525, 682, 696
BstF5I	GGATG	3 cut(s)	128, 134, 484
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	3 cut(s)	114, 294, 659
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 346, 363, 382, 686
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	504, 655
BstSFI	CTRYAG	2 cut(s)	186, 371
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	361, 676
BstV2I	GAAGAC	1 cut(s)	546
BstZ17I	GTATAC	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	682
BtsCI	GGATG	3 cut(s)	128, 134, 484
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	1 cut(s)	729
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	1 cut(s)	694
CseI	GACGC	2 cut(s)	410, 614
CviAII	CATG	2 cut(s)	410, 601
DdeI	CTNAG	3 cut(s)	525, 682, 696
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	655
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	2 cut(s)	413, 604
FatI	CATG	2 cut(s)	409, 600
FauNDI	CATATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	43, 350, 555, 690
FokI	GGATG	3 cut(s)	115, 121, 491
Fsp4HI	GCNGC	4 cut(s)	43, 350, 555, 690
FspBI	CTAG	2 cut(s)	56, 363
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	4 cut(s)	43, 350, 555, 690
GsuI	CTGGAG	1 cut(s)	678
HapII	CCGG	2 cut(s)	224, 505
HgaI	GACGC	2 cut(s)	410, 614
HhaI	GCGC	1 cut(s)	694
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	413, 604
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	8 cut(s)	6, 12, 156, 293, 314, 393, 542, 618
HpaII	CCGG	2 cut(s)	224, 505
HphI	GGTGA	2 cut(s)	35, 496
Hpy166II	GTNNAC	2 cut(s)	91, 98
Hpy188I	TCNGA	9 cut(s)	11, 68, 76, 313, 319, 420, 438, 463, 535
Hpy188III	TCNNGA	2 cut(s)	224, 297
Hpy8I	GTNNAC	2 cut(s)	91, 98
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	351, 377, 564
HpyCH4III	ACNGT	6 cut(s)	23, 82, 88, 95, 670, 721
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	3 cut(s)	257, 349, 357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 346, 363, 382, 686
HpyF3I	CTNAG	3 cut(s)	525, 682, 696
HpySE526I	ACGT	1 cut(s)	648
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	413, 604
HspAI	GCGC	1 cut(s)	692
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	3 cut(s)	52, 226, 508
LpnPI	CCDG	9 cut(s)	237, 282, 371, 518, 531, 642, 669, 669, 755
Lsp1109I	GCAGC	2 cut(s)	361, 676
LweI	GCATC	3 cut(s)	143, 235, 469
MaeI	CTAG	2 cut(s)	56, 363
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	7 cut(s)	23, 82, 208, 619, 631, 757, 766
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	6 cut(s)	114, 154, 179, 302, 548, 551
MfeI	CAATTG	1 cut(s)	263
MluCI	AATT	2 cut(s)	263, 559
MlyI	GAGTC	4 cut(s)	323, 387, 536, 627
MnlI	CCTC	5 cut(s)	43, 157, 490, 522, 691
MroI	TCCGGA	1 cut(s)	223
MseI	TTAA	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	2 cut(s)	224, 505
MspR9I	CCNGG	2 cut(s)	506, 657
MunI	CAATTG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	254, 346, 363, 382, 686
NciI	CCSGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	413, 604
NmuCI	GTSAC	3 cut(s)	23, 619, 631
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	6, 12, 156, 293
PfoI	TCCNGGA	2 cut(s)	504, 655
PkrI	GCNGC	4 cut(s)	44, 351, 556, 691
PleI	GAGTC	4 cut(s)	322, 387, 536, 626
PpsI	GAGTC	4 cut(s)	322, 387, 536, 626
PsiI	TTATAA	1 cut(s)	515
Psp1406I	AACGTT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	689
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	4 cut(s)	43, 350, 555, 690
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	4 cut(s)	323, 387, 536, 627
ScrFI	CCNGG	2 cut(s)	506, 657
SfaNI	GCATC	3 cut(s)	143, 235, 469
SfcI	CTRYAG	2 cut(s)	186, 371
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	2 cut(s)	263, 559
SsiI	CCGC	6 cut(s)	42, 101, 132, 138, 482, 555
SspMI	CTAG	2 cut(s)	56, 363
StyD4I	CCNGG	2 cut(s)	504, 655
TaaI	ACNGT	6 cut(s)	23, 82, 88, 95, 670, 721
TaiI	ACGT	1 cut(s)	651
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	263, 559
TauI	GCSGC	2 cut(s)	45, 557
TfiI	GAWTC	4 cut(s)	6, 12, 156, 293
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	3 cut(s)	23, 619, 631
TseI	GCWGC	2 cut(s)	349, 689
Tsp45I	GTSAC	3 cut(s)	23, 619, 631
TspDTI	ATGAA	2 cut(s)	398, 503
TspGWI	ACGGA	2 cut(s)	102, 227
TspRI	CASTG	1 cut(s)	640
Vha464I	CTTAAG	1 cut(s)	565
XapI	RAATTY	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	2 cut(s)	56, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.