Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003878.1

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Forward (+)

232306 .. 234910

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003878.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgattaataaactacagcattgtcctccctctccgcccccttcctcctacagcccctcatcccaaggctccaccgacttgatgaaggccggtttcagaatggcaacggaggaagaagggcatgtgcgacaccgattttacttccgcggtatggaaattcttggctttgggactgtttgtttcatcttttgggaaattgggtttggggtgttcagtccgactcatcacccccagtttatctgttataaatttggttccgagtacttggacaaggatgtagctgatcagattttgagtgcttctggttcagtgcagcgagtatcttcatttgggacagaatcagattggatggagccttatgtttacctttgtaattcccagcctcagggacgtcaaagagtttatgaggctttcagtttattgcagaatgagtcatctgttcagagaatagtggtttcattgtcatctgatagagcagtttgggatgctgtgatgaataatgaggtggtgagggagctgagggaatccttctatgcagagatcctgaatgagaaacatgacgatcttgacaaggctgatatcttctcattgggagttgctatgtatgagcttattagaggttcaccgttaccggaagaaggacctcaaaccttaaatcttaagaaaggaaaattgccactgcttcctggtcactccttgcaacttcagaacttgctcaaggtactctatgttttctattcctttagttgttggctttgctttataactgtgaagttgtcacttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.81

Weight (kDa)

5.66

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	246, 764
AatII	GACGTC	1 cut(s)	394
AccII	CGCG	1 cut(s)	147
AciI	CCGC	3 cut(s)	35, 145, 147
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	156, 248
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	391
AfaI	GTAC	2 cut(s)	263, 723
AfiI	CCNNNNNNNGG	3 cut(s)	151, 385, 638
AflII	CTTAAG	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	3 cut(s)	281, 517, 610
AluI	AGCT	3 cut(s)	281, 517, 610
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	2 cut(s)	156, 248
AseI	ATTAAT	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	3 cut(s)	218, 520, 615
AvaII	GGWCC	1 cut(s)	641
AxyI	CCTNAGG	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	1 cut(s)	283
BfmI	CTRYAG	2 cut(s)	14, 49
BfrI	CTTAAG	1 cut(s)	659
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	3 cut(s)	70, 256, 354
BmrFI	CCNGG	1 cut(s)	687
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	64, 145
BsaWI	WCCGGW	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 385, 638
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	232
Bse21I	CCTNAGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	64, 145
BseGI	GGATG	4 cut(s)	59, 280, 354, 490
BseLI	CCNNNNNNNGG	3 cut(s)	151, 385, 638
BseMII	CTCAG	2 cut(s)	398, 509
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	90, 632
BslFI	GGGAC	3 cut(s)	184, 346, 402
BslI	CCNNNNNNNGG	3 cut(s)	151, 385, 638
BsmFI	GGGAC	3 cut(s)	184, 346, 402
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	283, 540, 562
BspACI	CCGC	3 cut(s)	35, 145, 147
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	397, 510
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	70, 256, 354
BspPI	GGATC	1 cut(s)	535
BspTI	CTTAAG	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	64, 145
BssMI	GATC	3 cut(s)	283, 540, 562
BssNI	GRCGYC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	175, 627, 769
BstACI	GRCGYC	1 cut(s)	391
BstAFI	CTTAAG	1 cut(s)	659
BstDEI	CTNAG	2 cut(s)	384, 518
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	4 cut(s)	59, 280, 354, 490
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	3 cut(s)	286, 543, 565
BstMBI	GATC	3 cut(s)	283, 540, 562
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	2 cut(s)	14, 49
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	4 cut(s)	59, 280, 354, 490
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	2 cut(s)	315, 677
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	641
Cfr42I	CCGCGG	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	262, 722
CviAII	CATG	2 cut(s)	122, 557
CviQI	GTAC	2 cut(s)	262, 722
DdeI	CTNAG	2 cut(s)	384, 518
DpnI	GATC	3 cut(s)	285, 542, 564
DpnII	GATC	3 cut(s)	283, 540, 562
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	2 cut(s)	125, 560
FaqI	GGGAC	3 cut(s)	184, 346, 402
FatI	CATG	2 cut(s)	121, 556
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	4 cut(s)	46, 287, 361, 497
Fsp4HI	GCNGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	90, 632
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	125, 560
HinfI	GANTC	4 cut(s)	220, 338, 431, 524
HpaII	CCGG	2 cut(s)	90, 632
HphI	GGTGA	3 cut(s)	218, 520, 615
Hpy166II	GTNNAC	2 cut(s)	364, 623
Hpy188I	TCNGA	8 cut(s)	98, 219, 259, 288, 343, 444, 469, 708
Hpy188III	TCNNGA	2 cut(s)	544, 566
Hpy8I	GTNNAC	2 cut(s)	364, 623
HpyAV	CCTTC	5 cut(s)	51, 79, 110, 538, 632
HpyCH4III	ACNGT	3 cut(s)	175, 627, 769
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	313, 424, 536, 700
HpyF3I	CTNAG	2 cut(s)	384, 518
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	2 cut(s)	125, 560
Ksp22I	TGATCA	1 cut(s)	283
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	283, 540, 562
LmnI	GCTCC	3 cut(s)	74, 352, 514
LpnPI	CCDG	9 cut(s)	103, 245, 288, 371, 392, 557, 645, 672, 699
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	475
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	3 cut(s)	627, 689, 777
MalI	GATC	3 cut(s)	285, 542, 564
MboI	GATC	3 cut(s)	283, 540, 562
MboII	GAAGA	4 cut(s)	125, 315, 574, 647
MflI	RGATCY	1 cut(s)	540
MluCI	AATT	5 cut(s)	156, 195, 248, 373, 671
MlyI	GAGTC	2 cut(s)	214, 440
MmeI	TCCRAC	1 cut(s)	242
MseI	TTAA	3 cut(s)	6, 653, 660
MspA1I	CMGCKG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	2 cut(s)	90, 632
MspR9I	CCNGG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	1 cut(s)	147
NdeII	GATC	3 cut(s)	283, 540, 562
NlaIII	CATG	2 cut(s)	125, 560
NlaIV	GGNNCC	3 cut(s)	70, 256, 354
NmuCI	GTSAC	2 cut(s)	689, 777
NspI	RCATGY	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	338, 524
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	2 cut(s)	214, 439
PpsI	GAGTC	2 cut(s)	214, 439
PpuMI	RGGWCCY	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	6
PsiI	TTATAA	2 cut(s)	246, 764
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	685
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	3 cut(s)	70, 256, 354
PspPI	GGNCC	1 cut(s)	641
PspPPI	RGGWCCY	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	2 cut(s)	263, 723
RsaNI	GTAC	2 cut(s)	262, 722
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	6, 653, 660
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	3 cut(s)	283, 540, 562
Sau96I	GGNCC	1 cut(s)	641
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	2 cut(s)	214, 440
ScrFI	CCNGG	1 cut(s)	687
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	2 cut(s)	14, 49
Sfr303I	CCGCGG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	659, 716
SmoI	CTYRAG	2 cut(s)	659, 716
Sse9I	AATT	5 cut(s)	156, 195, 248, 373, 671
SsiI	CCGC	3 cut(s)	35, 145, 147
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	3 cut(s)	175, 627, 769
TaiI	ACGT	1 cut(s)	394
TasI	AATT	5 cut(s)	156, 195, 248, 373, 671
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	338, 524
Tru1I	TTAA	3 cut(s)	6, 653, 660
Tru9I	TTAA	3 cut(s)	6, 653, 660
TscAI	CASTG	2 cut(s)	315, 684
TseFI	GTSAC	2 cut(s)	689, 777
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	2 cut(s)	689, 777
TspDTI	ATGAA	5 cut(s)	98, 172, 315, 447, 509
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	315, 684
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	641
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	2 cut(s)	156, 248
XceI	RCATGY	1 cut(s)	125
ZraI	GACGTC	1 cut(s)	392
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.