Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002211

Physical Location & Seq

Genomic Coordinates Reverse (-)

48657487 .. 48660012

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG355300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATGTTCGGCGGCAGAAGCATGGGCGGCGGTGGCGGCGGAGGAAGTATGTTCCGTACAGTCAGCAGGGCGGCGCTGACTAGAACCACCGGTGTTGCAATCCAAGAACCCATCACTTCTTCGAGTTCTAACACCAACACAACCACCACGACTGCTACTAGTCCTTCGGCTTCTAGGAATACCCAGAAACCCGGTTCGGTTAGTAACCTCTGTCTCTCTTCTCCTACCTCTCCGAATTGTGGGCCCGTTTCTGCGAGTTCCGACGGGCACAACTGGCCCACTTCGCCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGACGTTGAGAAAGCTCATGGGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCACTCCGACTCATCACCCCCAGTTCATCCGGGATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCCGATTTTGAGTGCTTCTGGTTCGTTGCAGCGAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTCTGCTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATGGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGAGAGCTCAGGGAATCCTTCTATGCAGGTTGGTATGAATTTCAAGGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

27.98

Weight (kDa)

4.66

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25170 AT4G25170 AT5G61490
fragaria_vesca	FvH4_7g27250
malus_domestica	MD01G1181400.v1.1 MD01G1181500.v1.1 MD07G1251500.v1.1 MD07G1251600.v1.1
prunus_persica	Prupe.2G275300_v2.0.a1 Prupe.2G275300_v2.0.a1
pyrus_communis	pycom01g19140 pycom07g22420
rosa_chinensis	RchiOBHm_Chr1g0374081 RchiOBHm_Chr5g0046391 RchiOBHm_Chr5g0058361
rosa_laevigata	RLG00000002364 RLG00000003245 RLG00000007090 RLG00000016101 RLG00000026765
rosa_multiflora	Rmu_co8246273.1_g000001 Rmu_sc0000322.1_g000002 Rmu_sc0001552.1_g000018 Rmu_sc0001684.1_g000005 Rmu_sc0003878.1_g000051 Rmu_sc0006924.1_g000010 Rmu_ssc0000323.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283760 Rroxscaffold_7G00196900
rosa_rugosa	Rorug01G0380500 Rorug02G0146100 Rorug04G0028500
rosa_samantha	Rh1AG391300 Rh1BG355300 Rh1CG368300 Rh1DG386000 Rh2CG512900 Rh3BG374200 Rh3CG245000 Rh5BG317100 Rh5CG416500
rosa_wichuraiana	Rw1G034430 Rw6G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	746
AciI	CCGC	6 cut(s)	12, 27, 30, 36, 39, 71
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	467, 767
AfaI	GTAC	2 cut(s)	58, 482
AfiI	CCNNNNNNNGG	2 cut(s)	239, 604
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	422, 773
AhlI	ACTAGT	1 cut(s)	158
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	3 cut(s)	344, 500, 736
AluI	AGCT	3 cut(s)	344, 500, 736
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	2 cut(s)	242, 275
ApaI	GGGCCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	2 cut(s)	467, 767
AsiGI	ACCGGT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	4 cut(s)	242, 243, 276, 374
AsuC2I	CCSGG	2 cut(s)	192, 461
AsuHPI	GGTGA	2 cut(s)	437, 739
AvaII	GGWCC	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	603
BaeGI	GKGCMC	2 cut(s)	246, 270
BanII	GRGCYC	2 cut(s)	246, 738
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	2 cut(s)	119, 562
BcnI	CCSGG	2 cut(s)	192, 461
BcoDI	GTCTC	1 cut(s)	218
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	3 cut(s)	81, 159, 174
BfmI	CTRYAG	1 cut(s)	779
BfoI	RGCGCY	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	746
BisI	GCNGC	5 cut(s)	13, 28, 37, 72, 533
BlsI	GCNGC	5 cut(s)	14, 29, 38, 73, 534
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	2 cut(s)	192, 461
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	4 cut(s)	242, 243, 276, 374
BmiI	GGNNCC	3 cut(s)	244, 475, 573
BmrFI	CCNGG	2 cut(s)	192, 461
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	694
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	737
BpuMI	CCSGG	2 cut(s)	192, 461
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 604
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	278, 451
Bse21I	CCTNAGG	1 cut(s)	603
BseGI	GGATG	5 cut(s)	456, 499, 573, 614, 709
BseLI	CCNNNNNNNGG	2 cut(s)	239, 604
BseMII	CTCAG	3 cut(s)	302, 617, 751
BseNI	ACTGG	2 cut(s)	278, 451
BseSI	GKGCMC	2 cut(s)	246, 270
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	597
BshFI	GGCC	2 cut(s)	244, 277
BshTI	ACCGGT	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	738
BsiSI	CCGG	3 cut(s)	90, 192, 460
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	239, 604
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	2 cut(s)	244, 277
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	246, 270, 738
Bsp143I	GATC	1 cut(s)	502
BspACI	CCGC	6 cut(s)	12, 27, 30, 36, 39, 71
BspANI	GGCC	2 cut(s)	244, 277
BspCNI	CTCAG	3 cut(s)	301, 616, 750
BspLI	GGNNCC	3 cut(s)	244, 475, 573
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	497
BspQI	GCTCTTC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	278, 451
BssAI	RCCGGY	1 cut(s)	89
BssMI	GATC	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	61, 780
Bst6I	CTCTTC	2 cut(s)	223, 423
BstDEI	CTNAG	3 cut(s)	288, 603, 737
BstF5I	GGATG	5 cut(s)	456, 499, 573, 614, 709
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 27, 33, 36, 274, 283, 413
BstSCI	CCNGG	2 cut(s)	190, 459
BstSFI	CTRYAG	1 cut(s)	779
BstSLI	GKGCMC	2 cut(s)	246, 270
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	603
BsuRI	GGCC	2 cut(s)	244, 277
BtsCI	GGATG	5 cut(s)	456, 499, 573, 614, 709
BveI	ACCTGC	1 cut(s)	746
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	242, 243, 276, 374
Csp6I	GTAC	2 cut(s)	57, 481
CspAI	ACCGGT	1 cut(s)	89
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	2 cut(s)	22, 347
CviJI	RGCY	9 cut(s)	170, 244, 277, 344, 500, 574, 601, 629, 736
CviKI_1	RGCY	9 cut(s)	170, 244, 277, 344, 500, 574, 601, 629, 736
CviQI	GTAC	2 cut(s)	57, 481
DdeI	CTNAG	3 cut(s)	288, 603, 737
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	223, 423
EarI	CTCTTC	2 cut(s)	223, 423
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	736
Eco24I	GRGCYC	2 cut(s)	246, 738
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	736
Eco81I	CCTNAGG	1 cut(s)	603
EcoICRI	GAGCTC	1 cut(s)	736
EcoT38I	GRGCYC	2 cut(s)	246, 738
FaeI	CATG	2 cut(s)	25, 350
FaiI	YATR	6 cut(s)	23, 50, 348, 624, 753, 765
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	2 cut(s)	21, 346
Fnu4HI	GCNGC	5 cut(s)	13, 28, 37, 72, 533
FokI	GGATG	5 cut(s)	443, 506, 580, 621, 716
FriOI	GRGCYC	2 cut(s)	246, 738
Fsp4HI	GCNGC	5 cut(s)	13, 28, 37, 72, 533
FspBI	CTAG	3 cut(s)	81, 159, 174
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	5 cut(s)	13, 28, 37, 72, 533
GsaI	CCCAGC	1 cut(s)	601
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	244, 277
HapII	CCGG	3 cut(s)	90, 192, 460
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	25, 350
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	4 cut(s)	439, 557, 650, 743
HpaII	CCGG	3 cut(s)	90, 192, 460
HphI	GGTGA	2 cut(s)	437, 739
Hpy166II	GTNNAC	3 cut(s)	319, 400, 432
Hpy188I	TCNGA	8 cut(s)	234, 262, 438, 478, 507, 562, 663, 688
Hpy188III	TCNNGA	2 cut(s)	356, 387
Hpy8I	GTNNAC	3 cut(s)	319, 400, 432
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	4 cut(s)	174, 393, 585, 757
HpyCH4III	ACNGT	2 cut(s)	61, 780
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	98, 532, 643, 755
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 27, 33, 36, 274, 283, 413
HpyF3I	CTNAG	3 cut(s)	288, 603, 737
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	25, 350
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	502
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	3 cut(s)	81, 159, 174
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	5 cut(s)	111, 210, 341, 410, 534
MhlI	GDGCHC	3 cut(s)	246, 270, 738
MluCI	AATT	4 cut(s)	235, 467, 592, 767
MlyI	GAGTC	2 cut(s)	433, 659
MmeI	TCCRAC	2 cut(s)	285, 461
MnlI	CCTC	7 cut(s)	35, 218, 238, 297, 612, 619, 715
MspI	CCGG	3 cut(s)	90, 192, 460
MspR9I	CCNGG	2 cut(s)	192, 461
MwoI	GCNNNNNNNGC	7 cut(s)	18, 27, 33, 36, 274, 283, 413
NciI	CCSGG	2 cut(s)	192, 461
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	2 cut(s)	25, 350
NlaIV	GGNNCC	3 cut(s)	244, 475, 573
PciSI	GCTCTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	557, 743
PfoI	TCCNGGA	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	14, 29, 38, 73, 534
PleI	GAGTC	2 cut(s)	433, 658
PpsI	GAGTC	2 cut(s)	433, 658
Psp124BI	GAGCTC	1 cut(s)	738
PspFI	CCCAGC	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	244, 475, 573
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	4 cut(s)	242, 243, 276, 374
RsaI	GTAC	2 cut(s)	58, 482
RsaNI	GTAC	2 cut(s)	57, 481
SacI	GAGCTC	1 cut(s)	738
SapI	GCTCTTC	1 cut(s)	423
SatI	GCNGC	5 cut(s)	13, 28, 37, 72, 533
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	4 cut(s)	242, 243, 276, 374
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	2 cut(s)	433, 659
ScrFI	CCNGG	2 cut(s)	192, 461
SduI	GDGCHC	3 cut(s)	246, 270, 738
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	779
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	4 cut(s)	235, 467, 592, 767
SsiI	CCGC	6 cut(s)	12, 27, 30, 36, 39, 71
SspMI	CTAG	3 cut(s)	81, 159, 174
SstI	GAGCTC	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	190, 459
TaaI	ACNGT	2 cut(s)	61, 780
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	122, 303
TasI	AATT	4 cut(s)	235, 467, 592, 767
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	4 cut(s)	15, 30, 39, 74
TfiI	GAWTC	2 cut(s)	557, 743
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	6 cut(s)	408, 445, 534, 666, 728, 780
TspGWI	ACGGA	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	2 cut(s)	467, 767
XspI	CTAG	3 cut(s)	81, 159, 174
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.